PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4BS_57F165BB1.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family TALE
Protein Properties Length: 352aa    MW: 38191.9 Da    PI: 6.5318
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4BS_57F165BB1.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.72.2e-092903222254
                            SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
               Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                            ++yps +e+ +LA ++gL+ rq+++WF N R +
  Traes_4BS_57F165BB1.1 290 DPYPSDNEKLRLAVSTGLSRRQISNWFINARVR 322
                            89*****************************88 PP
2BELL54.82.3e-18142205972
                   BELL   9 kakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                            +akLl ll eV  r ++y ++l  v+ssFe + g  + + Ytsl ++a++rhF +L+ ai  ++
  Traes_4BS_57F165BB1.1 142 QAKLLGLLSEVRPRQEHYFQELSRVASSFEPALGPAATAGYTSLMSRAMTRHFGNLRRAILRKL 205
                            69**********************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.0E-670203IPR006563POX domain
PfamPF075261.8E-2371201IPR006563POX domain
SMARTSM003898.0E-9266330IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.6E-24271332IPR009057Homeodomain-like
SuperFamilySSF466895.13E-17273336IPR009057Homeodomain-like
CDDcd000862.53E-11277327No hitNo description
PfamPF059202.1E-17283322IPR008422Homeobox KN domain
PROSITE profilePS5007111.872285326IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MVTKRLQESG SPKQARPAPV ATDSANGPLM LLRLREQCCC GHPAASPVGP LALTLGAPAA  60
TDDACRRCDS VLRGSRYLRP VQELLRDAVS AVVGGDDDES AGGGSEDEAG QEAALRELRL  120
RAAATSRRGI LAKNDGGAGA VQAKLLGLLS EVRPRQEHYF QELSRVASSF EPALGPAATA  180
GYTSLMSRAM TRHFGNLRRA ILRKLAAVTR PAPAPRARLW ANDDSEEDEE DDDEQDYDPV  240
QTEDMVSRLV RRTKQAAAAR AAEQVCKPLR GLPEGSVAVL RAWLFNHFLD PYPSDNEKLR  300
LAVSTGLSRR QISNWFINAR VRLWKPMVEE MYADEFSAVS SRDDDGGAAS SQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A2e-15272330563Homeobox protein Meis2
4xrm_B2e-15272330563Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3733881e-172AK373388.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3029F10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020149612.10.0BEL1-like homeodomain protein 3
TrEMBLA0A446RQ900.0A0A446RQ90_TRITD; Uncharacterized protein
STRINGTraes_4BS_57F165BB1.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77153146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75430.14e-46BEL1-like homeodomain 11
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]