PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4BS_5690C215A.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 302aa MW: 33144.2 Da PI: 6.8459 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53 | 8.1e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv +++++G+g+W++++ g+ R+ k+c++rw +yl Traes_4BS_5690C215A.1 14 KGPWTPEEDIILVSYIQEHGPGNWRSVPVSTGLMRCSKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 43.4 | 7.9e-14 | 67 | 113 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T E+ +v++ +lG+ +W++Ia++++ +Rt++++k++w+++l Traes_4BS_5690C215A.1 67 RGNFTSHEEGVIVHLQSLLGNSRWAAIASYLP-RRTDNDIKNYWNTHL 113 89******************************.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-23 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 22.681 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.12E-28 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.00E-11 | 16 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.4E-22 | 65 | 117 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.796 | 66 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 1.8E-11 | 66 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-11 | 67 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.71E-10 | 69 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
MGRPPCCDKL GVKKGPWTPE EDIILVSYIQ EHGPGNWRSV PVSTGLMRCS KSCRLRWTNY 60 LRPGIKRGNF TSHEEGVIVH LQSLLGNSRW AAIASYLPRR TDNDIKNYWN THLKKKLRKQ 120 QAMGAIFGPP AASSPGTAGD NFDHHNHHDM VSRADGYGAG QAYINTEVSQ LIAGRGQSPF 180 ADAAAEVCSS SSYASSVDNI SKLLGGFMKS SPPPPLHNNY DADDVKPLLP LDSMSGTSSA 240 ELSFTAGVQQ PALMGGRVGY EYDDETKRQQ HQAPLSSIEK WLFDEAAELE LSDECYSVPM 300 LF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 2e-23 | 14 | 117 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 3e-23 | 14 | 117 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 3e-23 | 14 | 117 | 4 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269|PubMed:22018045}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269|PubMed:22018045}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK356090 | 0.0 | AK356090.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1029P14. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020187926.1 | 0.0 | transcription factor MYB30-like | ||||
Swissprot | B3VTV7 | 1e-88 | MYB60_VITVI; Transcription factor MYB60 | ||||
TrEMBL | A0A446RYU3 | 0.0 | A0A446RYU3_TRITD; Uncharacterized protein | ||||
STRING | Traes_4BS_5690C215A.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP229 | 38 | 296 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08810.1 | 4e-79 | myb domain protein 60 |
Publications ? help Back to Top | |||
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