PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4BS_5690C215A.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB
Protein Properties Length: 302aa    MW: 33144.2 Da    PI: 6.8459
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4BS_5690C215A.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding538.1e-171461148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g+WT+eEd +lv +++++G+g+W++++   g+ R+ k+c++rw +yl
  Traes_4BS_5690C215A.1 14 KGPWTPEEDIILVSYIQEHGPGNWRSVPVSTGLMRCSKSCRLRWTNYL 61
                           79********************************************97 PP

2Myb_DNA-binding43.47.9e-1467113148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            rg++T  E+  +v++  +lG+ +W++Ia++++ +Rt++++k++w+++l
  Traes_4BS_5690C215A.1  67 RGNFTSHEEGVIVHLQSLLGNSRWAAIASYLP-RRTDNDIKNYWNTHL 113
                            89******************************.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-23564IPR009057Homeodomain-like
PROSITE profilePS5129422.681965IPR017930Myb domain
SuperFamilySSF466896.12E-2811109IPR009057Homeodomain-like
SMARTSM007171.4E-121363IPR001005SANT/Myb domain
PfamPF002492.3E-151461IPR001005SANT/Myb domain
CDDcd001672.00E-111661No hitNo description
Gene3DG3DSA:1.10.10.604.4E-2265117IPR009057Homeodomain-like
PROSITE profilePS5129416.79666117IPR017930Myb domain
SMARTSM007171.8E-1166115IPR001005SANT/Myb domain
PfamPF002491.6E-1167113IPR001005SANT/Myb domain
CDDcd001675.71E-1069113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MGRPPCCDKL GVKKGPWTPE EDIILVSYIQ EHGPGNWRSV PVSTGLMRCS KSCRLRWTNY  60
LRPGIKRGNF TSHEEGVIVH LQSLLGNSRW AAIASYLPRR TDNDIKNYWN THLKKKLRKQ  120
QAMGAIFGPP AASSPGTAGD NFDHHNHHDM VSRADGYGAG QAYINTEVSQ LIAGRGQSPF  180
ADAAAEVCSS SSYASSVDNI SKLLGGFMKS SPPPPLHNNY DADDVKPLLP LDSMSGTSSA  240
ELSFTAGVQQ PALMGGRVGY EYDDETKRQQ HQAPLSSIEK WLFDEAAELE LSDECYSVPM  300
LF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-23141174105MYB PROTO-ONCOGENE PROTEIN
1mse_C3e-23141174105C-Myb DNA-Binding Domain
1msf_C3e-23141174105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269|PubMed:22018045}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269|PubMed:22018045}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3560900.0AK356090.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1029P14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020187926.10.0transcription factor MYB30-like
SwissprotB3VTV71e-88MYB60_VITVI; Transcription factor MYB60
TrEMBLA0A446RYU30.0A0A446RYU3_TRITD; Uncharacterized protein
STRINGTraes_4BS_5690C215A.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22938296
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08810.14e-79myb domain protein 60
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]