PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4BS_43C44F47B.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family Nin-like
Protein Properties Length: 912aa    MW: 100316 Da    PI: 5.3907
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4BS_43C44F47B.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK901.9e-28558608252
                 RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                            ek++sl+ l++yF++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++
  Traes_4BS_43C44F47B.1 558 EKHVSLKILQQYFAGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKIKKV 608
                            799**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151916.802547628IPR003035RWP-RK domain
PfamPF020423.7E-25561608IPR003035RWP-RK domain
SuperFamilySSF542772.98E-21807897No hitNo description
Gene3DG3DSA:3.10.20.2404.3E-21812893No hitNo description
SMARTSM006662.5E-21814896IPR000270PB1 domain
PROSITE profilePS5174522.536814896IPR000270PB1 domain
PfamPF005642.0E-16815895IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 912 aa     Download sequence    Send to blast
MDENGTPDYS GGGSDMDLLM LSGFDDLDSF PELGAGPSFS DGILPSFSVS PVQQVTHISP  60
SPPSVDAEEQ GDVSITDGSD CSVSLASNEV MNVSAPTVPK TVYGGVTLME RMLRALAMLK  120
EASTAGPVLV QVWIPVRNGD HQVLTTSDQP FLLDERLTGY REVSRQFTFS ATEGPGLFPG  180
LPGRVFISGM PEWTSNVMYY NTSEFLRVDY AIRNEVRGSL AMPVFNSSGG SCCAVLEVVM  240
TQEKDNFCSE MDNLSNALQS VHLSTVRART HPQSLTRNQQ SVLTEILDVL RAVCHTHMLP  300
LALAWIPVCP NSSLNVSAEY GDQAIKFGLR NKDVLCVQES ACYINDMRMH DFLRACAEHP  360
LEKGQGVAGN AILSNHPFFS SDVREYDMHD YPLAHHARKF GLHAAVAIRL RSTYTGNDDY  420
VLEFFLPLTC KVREEQQLLL DDISMTMQRV CSSLRTVSDA ELKENTTTMR SEIRCSSSDV  480
SISSCNQIDV SSEVKINVPL ENQIKNSVEQ LADKKYAKFE PGTTSQNFEN CSSTGKNVSL  540
TLLQESTSDG LKIRSSTEKH VSLKILQQYF AGSLKDAAKS IGVCPTTLKR ICRQHGISRW  600
PSRKIKKVNR SLEKIQNVIS TVHEVDGVIK YDPATGCIVS SVSHTEEPSM MNVEHRSSDS  660
LPTECRKFQP DYDAYKREHL GQAVPHKAQN EKRSETHINL NPGGLSRNSH FGRTSKGSEC  720
QDASNDSYLT KEMICPGGME MWVEGAEQKN VLWNSISMPQ QWKIEIETDK SNAIVEQSLA  780
SSSSMTDCSS GGTSSDGTLK KCLKSRPVDG SNASIVVKAA YKDDTVRLKL LPSMKYQDLL  840
EEIAKRLKLS VGAFQLKYKD DEDEWVILAS DADLQECLDV LDTTGARIMK VQVRDVPCAT  900
GASSGSSFIS GQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2492770.0AK249277.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf33g13, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020152944.10.0protein NLP2-like
TrEMBLA0A446RV700.0A0A446RV70_TRITD; Uncharacterized protein
STRINGTraes_4BS_43C44F47B.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36703573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59580.21e-173Nin-like family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]