PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4BS_3F0358CB1.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 469aa    MW: 55521.3 Da    PI: 7.4718
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4BS_3F0358CB1.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR180.92.3e-2520114191
                   FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkek.dgkwevtklele 84 
                            +fYn+YA e GFsvrks+ +    n+ i+ r+ vCs++g+re+++ k   ++++rr+r+ tr+gC+akl++++++ +g+w v+++  e
  Traes_4BS_3F0358CB1.1  20 EFYNKYALEKGFSVRKSYVEWDGSNKYIILRKIVCSRQGFREDKHMKrkmEDRKRRPRSLTRVGCNAKLVITRQEeTGRWFVKDFIDE 107
                            6******************************************999888889999*******************99************ PP

                   FAR1  85 HnHelap 91 
                            H+H+lap
  Traes_4BS_3F0358CB1.1 108 HSHPLAP 114
                            ****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.3E-2320114IPR004330FAR1 DNA binding domain
PfamPF105516.2E-36235329IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MFEYVNVVSK MFDSEAEGYE FYNKYALEKG FSVRKSYVEW DGSNKYIILR KIVCSRQGFR  60
EDKHMKRKME DRKRRPRSLT RVGCNAKLVI TRQEETGRWF VKDFIDEHSH PLAPRDLSCL  120
LRSHRRISDE QKADIADMEK CGIRKYRIMD ILCFQYGGFD KVGCIKRDIY NFCHANKQET  180
ISAGDANTVI MHMMARRERD VDFFFKYLVD EHGHLKGLFW ADSQSRLDYE AFGDVIVFDS  240
TYRTNKYNLP FVPFVGLNHH RSTVIFGCGI ISHETSQAYE WMLRTFSDCM AQKHPISVIT  300
DGDLAMQRAI RVVWPDSNHR LCIWHIQQNI VRHLHDDDVK EEFRYFIYDT SSIEEHEIKW  360
IQFLQRNKVT SEESWLHQMY QMRKLWCAPY LEGRCFLGLS SNQRSESLNS VLHTHLEGKM  420
SLFEMLEHYE RCLASRRINE ALHDVEALQS VPFTEENASP LEKHAATVF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17075DRKRRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020162107.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A452XQP30.0A0A452XQP3_AEGTS; Uncharacterized protein
TrEMBLA0A453B6N60.0A0A453B6N6_AEGTS; Uncharacterized protein
TrEMBLA0A453JUJ90.0A0A453JUJ9_AEGTS; Uncharacterized protein
STRINGTraes_4BS_3F0358CB1.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.18e-92FAR1-related sequence 5
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]