PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4BS_3DB087DC8.2 | ||||||||
Common Name | WBLH1-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | TALE | ||||||||
Protein Properties | Length: 765aa MW: 80775.3 Da PI: 6.9311 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.5 | 2.7e-09 | 559 | 596 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps +++ LA+++gL+ +qV++WF N R + Traes_4BS_3DB087DC8.2 559 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 596 554459******************************88 PP | |||||||
2 | BELL | 118.7 | 2.8e-38 | 420 | 490 | 2 | 72 |
BELL 2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 r e q+kkakL+s+l+eVd+rY++y++q+q+v++ F+ v+g g+a+pYt+lA+ka+SrhFrcLkdaia q+ Traes_4BS_3DB087DC8.2 420 RFEQQRKKAKLISMLDEVDRRYNHYCDQMQMVVNFFDSVMGFGAATPYTALAQKAMSRHFRCLKDAIAAQL 490 6799****************************************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF50494 | 4.04E-7 | 112 | 199 | IPR009003 | Peptidase S1, PA clan |
SMART | SM00574 | 3.2E-67 | 344 | 488 | IPR006563 | POX domain |
Pfam | PF07526 | 2.1E-52 | 349 | 487 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.6 | 537 | 600 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.33E-13 | 540 | 601 | No hit | No description |
SMART | SM00389 | 1.5E-9 | 540 | 604 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.91E-17 | 542 | 607 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.7E-28 | 543 | 606 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 3.9E-18 | 557 | 596 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 765 aa Download sequence Send to blast |
MGIAAPPCQA TTQHVSSTPK SSAAIYGGRP ATASSMSHSQ GFHQGSSGVY GFSSDGFDRP 60 GSSQDHDQQQ EQQHHVAQQS RRDKMRVQGF DPAAAAAHGL LPIDGDEHVE PGAMYDHAAA 120 AGASNMLAEM FNFSAQTPSG PSATELLASQ MNANYRFGFR QQAPGAVVAG LPGDGGWFGS 180 GGPGRAGVVL GGANLLGETS SPKQQGGMAG LATDPAAAMQ LFLMNPQQQQ QSRSSPTSPP 240 PSDAQSAIQH HEAFQAYGNA ASSFGGGGAG VVEGQGLSLS LSPSLQQLEM AKQAEELRVR 300 DGVLYFNRQQ QQQQQAPSVQ QLPMALHGQV GAMGQQLHVG YGPAGVAGVL RNSKYTRAAQ 360 ELLDEFCSVG RGQTIKGGGR GAGGSSSNPN ASKGGPSSSG AGQSPSSASR EPPQLSPADR 420 FEQQRKKAKL ISMLDEVDRR YNHYCDQMQM VVNFFDSVMG FGAATPYTAL AQKAMSRHFR 480 CLKDAIAAQL RHTCELLGEK DAGTSSGLTK GETPRLRAID QSLRQQRAFH HMGMMEQEAW 540 RPQRGLPERS VSILRSWLFE HFLHPYPSDA DKHLLARQTG LSRNQVSNWF INARVRLWKP 600 MIEEMYQQET KELEGSSAGG GGGGPESGND PSGADDLHSP TTTGAHQHPQ QQVVMQHGDG 660 RYGQQEHGMS GVHPHKLDPG AGPSVADAAF VGLDPAELLG GDAHVGAADD LYGRFEPGVR 720 MRYGPATTGS VSGNVSLTLG LQHAGAGNQG PDGSGRFSLR DYNGC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrs_A | 2e-16 | 546 | 603 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 2e-16 | 546 | 603 | 1 | 58 | Homeobox protein Meis1 |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB546641 | 0.0 | AB546641.1 Triticum aestivum WBLH1-1 mRNA for BEL1-type homeodomain protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020157077.1 | 0.0 | BEL1-like homeodomain protein 4 isoform X2 | ||||
TrEMBL | D4QFH9 | 0.0 | D4QFH9_WHEAT; BEL1-type homeodomain protein | ||||
STRING | Traes_4BS_3DB087DC8.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4433 | 29 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23760.3 | 1e-128 | BEL1-like homeodomain 4 |
Publications ? help Back to Top | |||
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