PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Traes_4BS_382B98EB8.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 530aa MW: 57847.7 Da PI: 8.1757 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.2 | 2.5e-07 | 83 | 103 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg Traes_4BS_382B98EB8.2 83 PCPDFRK-GVCRRGDMCEYAHG 103 8******.*************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 1.1E-5 | 78 | 104 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.7E-5 | 81 | 105 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.375 | 83 | 105 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.1E-5 | 83 | 103 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.9E-4 | 111 | 141 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.822 | 113 | 137 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 66 | 113 | 136 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 530 aa Download sequence Send to blast |
MMMSKFPDLP RVATSEKKEY PVDPSLPDIK NSIYASDEFR MYSFKIRPCS RAYSHDWTEC 60 PFVHPGENAR RRDPRKYHYS CVPCPDFRKG VCRRGDMCEY AHGVFECWLH PAQYRTRLCK 120 DGTGCNRRVC FFAHTTDELR PLYVSTGSAV PSPRASATAA MEMAAAMGLM PGSPSSVSAV 180 MSPFTPPRSP SGNGMPPSLG WQQPNVPTLH LPGSSLQSSR LRSSLNARDM HMDDYSLLQD 240 IDSQLINDLC YSRLGSSAGG NHSSRTKSLN PSNLDDLFSA EMVSSPRYNN ADQGAMFSPS 300 QKAAILNQFQ QQQQLLSPIN TGFSPKAVDN QQLHSRSSLL QASLGISSPG RMSPRCVESG 360 SPMNSHLAAA LAQREKQQQQ QQQQHQQTMR SLSSRDLGPS AARASAAVGS PLSSSWSKWG 420 SPSGAPDWGV NGEELGKLRR SSSFELRSGG DDPDLSWVHT LVKESPPEKQ ATTAESINNS 480 VRPSPQMHPG VSNGEGSGAS TQLNRHDQAA VIGALLEQMQ LDEQIGSLAT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK375304 | 0.0 | AK375304.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3090H13. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020195419.1 | 0.0 | zinc finger CCCH domain-containing protein 24 | ||||
Swissprot | Q10EL1 | 0.0 | C3H24_ORYSJ; Zinc finger CCCH domain-containing protein 24 | ||||
TrEMBL | A0A3B6IJT1 | 0.0 | A0A3B6IJT1_WHEAT; Uncharacterized protein | ||||
STRING | Traes_4BS_382B98EB8.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP823 | 37 | 126 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G41900.1 | 1e-159 | CCCH-type zinc finger protein with ARM repeat domain |
Publications ? help Back to Top | |||
---|---|---|---|
|