PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4BS_344A932261.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | GRAS | ||||||||
Protein Properties | Length: 676aa MW: 75110.1 Da PI: 6.8565 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 335.5 | 9.9e-103 | 299 | 670 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 +lLl+cA+a+s+++ + a +lL+r+++++sp+gd+ qRla+yf+++L+arla+ +sely++l s+ s +++ l+a +l+ ++ Traes_4BS_344A932261.3 299 HTLLLNCAQALSTDNRHSAVELLKRIRQHSSPKGDAGQRLAHYFANGLEARLAGRGSELYQSLLLSRIS---VADFLKANQLYMAAC 382 679************************************************************999998...*************** PP GRAS 89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelg 173 + k++++ a ++I +av+g++r+Hi+D++++qGlQWp Ll+ La+R++gpp++RiTg++ p++g + +eetg+rL++fA+ +g Traes_4BS_344A932261.3 383 CCKKVAYIFADKTICNAVAGKRRLHIVDYGLNQGLQWPGLLRMLAAREGGPPEVRITGIDLPQPGfhGAYHIEETGRRLRNFARVFG 469 ****************************************************************999999***************** PP GRAS 174 vpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerfl 258 vpf+f+ + + e++++e+L+++++E+l+V + q +l+des+ + +rd+vL+ +k+++P+v+++ + +++++sFl+rf Traes_4BS_344A932261.3 470 VPFKFRG-IPAKRETVRPEDLNIDRDEVLVVISLCQFRHLMDESLGFDGpsPRDQVLNNIKKMRPDVFIHGIMNGSYGATSFLTRFR 555 *******.69999*******************************98876669*********************************** PP GRAS 259 ealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk 345 eal +ysa fd l++++pr++e r +Er ++gr+ nv+acega+r+er et+++W+ r ++aG++++pl+ +++k + ++ + Traes_4BS_344A932261.3 556 EALFHYSAQFDLLDTTVPRDNEGRLLLERDIFGRSCLNVLACEGADRVERPETYKQWQLRNHRAGLRQLPLNPEVVKLVLDKVKDNY 642 *************************************************************************************** PP GRAS 346 sdgyrveeesgslvlgWkdrpLvsvSaW 373 + + v+ ++ +l+ Wk+r L++ S+W Traes_4BS_344A932261.3 643 HRNFVVDADQRWLLHRWKGRVLYAWSSW 670 999************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 59.35 | 272 | 651 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.4E-100 | 299 | 670 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 676 aa Download sequence Send to blast |
MAATPEEFLG QQGFLARLEP PSPSLFLDLP PTPRGGHDDD GHSSFDDMVL PYISRLLMEE 60 GTEDHLFYLY PNHPAVLRAQ QPFAQILVDV ADSASASTST PSPSSSSDAT ASTTPSTATA 120 SASASASPDD APVQISRPSY TDVNGHASAS PDNQSSGLLN GDEMAKQPSS DLFNHLLPGD 180 QDMLNLAFLK GMEEARKFLP PDISLPPIKE GTVVGGGNAA SLKKKRAAPA LEPDVGRPSK 240 LMMPEQEERN MFDEMMFQEH EICMKGTLQN LNGEPEKSSR KKGRSRKTTV DDSEMVDLHT 300 LLLNCAQALS TDNRHSAVEL LKRIRQHSSP KGDAGQRLAH YFANGLEARL AGRGSELYQS 360 LLLSRISVAD FLKANQLYMA ACCCKKVAYI FADKTICNAV AGKRRLHIVD YGLNQGLQWP 420 GLLRMLAARE GGPPEVRITG IDLPQPGFHG AYHIEETGRR LRNFARVFGV PFKFRGIPAK 480 RETVRPEDLN IDRDEVLVVI SLCQFRHLMD ESLGFDGPSP RDQVLNNIKK MRPDVFIHGI 540 MNGSYGATSF LTRFREALFH YSAQFDLLDT TVPRDNEGRL LLERDIFGRS CLNVLACEGA 600 DRVERPETYK QWQLRNHRAG LRQLPLNPEV VKLVLDKVKD NYHRNFVVDA DQRWLLHRWK 660 GRVLYAWSSW VAADAT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 1e-43 | 302 | 670 | 8 | 374 | GRAS family transcription factor containing protein, expressed |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK367226 | 0.0 | AK367226.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2053C24. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020172168.1 | 0.0 | scarecrow-like protein 34 | ||||
Swissprot | O80933 | 1e-136 | SCL9_ARATH; Scarecrow-like protein 9 | ||||
TrEMBL | A0A446S0K4 | 0.0 | A0A446S0K4_TRITD; Uncharacterized protein | ||||
STRING | Traes_4BS_344A932261.3 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP231 | 31 | 297 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 1e-134 | GRAS family protein |
Publications ? help Back to Top | |||
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