PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4BS_270084801.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 658aa    MW: 71550.4 Da    PI: 4.1217
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4BS_270084801.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.71.2e-12181222346
                            SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            +WT eE +ll++a + +Gg+ W+ Ia+++  ++t  qc +++++
  Traes_4BS_270084801.2 181 SWTDEETLLLLEALEIFGGK-WTEIAEHVA-TKTKTQCMLHFLQ 222
                            7*******************.*********.**********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5093412.129152IPR007526SWIRM domain
SuperFamilySSF466891.08E-5344IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.104.8E-5447IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS501359.687119165IPR000433Zinc finger, ZZ-type
SMARTSM002912.0E-8119163IPR000433Zinc finger, ZZ-type
SuperFamilySSF578502.47E-11121155No hitNo description
PfamPF005695.3E-8122158IPR000433Zinc finger, ZZ-type
CDDcd023368.64E-20123167No hitNo description
PROSITE patternPS013570125151IPR000433Zinc finger, ZZ-type
PROSITE profilePS5129321.06177228IPR017884SANT domain
SMARTSM007172.8E-13178226IPR001005SANT/Myb domain
SuperFamilySSF466893.59E-13178231IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-9179221IPR009057Homeodomain-like
PfamPF002495.3E-12181223IPR001005SANT/Myb domain
CDDcd001670.00221199223No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 658 aa     Download sequence    Send to blast
MMKFHANPQL QLEPKDLAEL SVGEVDARQE VFDFLDHWGL INFHPFPPAG LEESKPEESQ  60
SDSHNEEKAS LIEKLFKFEP VQSYMIPLPN KGEGEIPVPL PTLLPDPVLV EDVIAAAEPS  120
VEYHCNSCSV DCSGKRYHCR TQADFDLCSN CYNEAKFDAG MSKTDFILMD STEVSGARGT  180
SWTDEETLLL LEALEIFGGK WTEIAEHVAT KTKTQCMLHF LQMQIEDRFH DGDDIHQNIH  240
ESTEQALVEK GTPEVPEKME TEEKVEGKDT KDEKPSEKTE GNHTEEKTEE GSVVENKDAK  300
NSGGADSVTI PNVDEPKPSS DTDIAKENSV NLDTSEKNAP DDAIDISGEN ASNDAIDILK  360
SAFEAAGNFP GHEGSFADAG NPVMALAAFL AGLVEDDSAT TSCCSSLKAI SEDSPALQLA  420
SRHCYILEDP PSDLKDIFVT VSNTNKDEDQ AKGEDQAKDE DMVIDSTGNE KKDINVKEDN  480
TVSVEKQNSP SISPKDHKES DTKNVSCDDE APTVEPKSNK AKETDDPIPL VDKSASNDTK  540
VPSSSTKDSV APENNANGCG LSASQEVVAG STTCATNPEL LKDKPSSEVE PDDDSPSQGK  600
MELNKTEDAV AAPTAVQEDE KTHTLRNGRL EEDFVATLTC VNCTFKQLCW SSHAGSQT
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3628980.0AK362898.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2010P22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020166067.10.0SWI/SNF complex subunit SWI3D isoform X1
TrEMBLA0A3B6ILL50.0A0A3B6ILL5_WHEAT; Uncharacterized protein
TrEMBLA0A446RSM10.0A0A446RSM1_TRITD; Uncharacterized protein
STRINGTraes_4BS_270084801.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45421214
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]