PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_4BS_1B1F669A3.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

GRF

Protein Properties

Length: 596aa MW: 64763 Da PI: 7.9312

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_4BS_1B1F669A3.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	74.8	9.3e-24	200	243	2	45
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e Traes_4BS_1B1F669A3.2 200 LEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKHVEG 243 69***************************************986 PP
2	QLQ	61	3.3e-21	133	169	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yKyLaan vP++Ll++i++ Traes_4BS_1B1F669A3.2 133 GPFTPSQWMELEHQALIYKYLAANIAVPHNLLVPIRR 169 59*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	7.9E-13	133	169	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	23.156	134	169	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	3.7E-15	134	168	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	24.65	199	243	IPR014977	WRC domain
Pfam	PF08879	5.0E-20	201	242	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 596 aa Download sequence Send to blast
MDCKKGVIFG TTPPIAHIFL TQERFKQSST LSDRGCCFGS KIQERFKSCV CFYLIWYWFS 60 DLGCRPASDF LPPLACLPLS RKYYTFICFG FAFLSCTACL VAHLLVVLLS WVPGLSSVSL 120 SASIQNAMAR VRGPFTPSQW MELEHQALIY KYLAANIAVP HNLLVPIRRS VTSLYPSAYF 180 GSSTLGWGPF QLGYSGSADL EPGRCRRTDG KKWRCSRDAV ADQKYCERHM NRGRHRSRKH 240 VEGQPGHAAK AMPATVAAAA AQPGALATGG GGGATAGAAA ICHEQQPLKN YAANTIDPCS 300 LQYNREMVSK QQQHECEQVQ DSDTLSMLTS MSARNTNTGS MFPFSKEHHN HNPFEVTSSR 360 PDYGLVSSDS LMSSPHSSLE NVNLLTSHSQ RALSNEQQSS LSLQHFADWP RTPSQQGQGG 420 GGLSWPDAED MQAHQRTQLS VSAAPMASPD LSSASTSPIH EKLMLSPLKL SREYSPIGLS 480 IAATAAAAKD EGEANWMPMF RDSSMGGPLG EALNKNNGGN MEAKNYLSAS LNLMTDAWDS 540 SPLESSPVGV LQRTAFGSVS SSTGSSPRQE YHGVYDGNPR DDLGSIVVNH PSIRLM

Sequence ? help Back to Top

Protein Sequence Length: 596 aa Download sequence Send to blast

MDCKKGVIFG TTPPIAHIFL TQERFKQSST LSDRGCCFGS KIQERFKSCV CFYLIWYWFS  60
DLGCRPASDF LPPLACLPLS RKYYTFICFG FAFLSCTACL VAHLLVVLLS WVPGLSSVSL  120
SASIQNAMAR VRGPFTPSQW MELEHQALIY KYLAANIAVP HNLLVPIRRS VTSLYPSAYF  180
GSSTLGWGPF QLGYSGSADL EPGRCRRTDG KKWRCSRDAV ADQKYCERHM NRGRHRSRKH  240
VEGQPGHAAK AMPATVAAAA AQPGALATGG GGGATAGAAA ICHEQQPLKN YAANTIDPCS  300
LQYNREMVSK QQQHECEQVQ DSDTLSMLTS MSARNTNTGS MFPFSKEHHN HNPFEVTSSR  360
PDYGLVSSDS LMSSPHSSLE NVNLLTSHSQ RALSNEQQSS LSLQHFADWP RTPSQQGQGG  420
GGLSWPDAED MQAHQRTQLS VSAAPMASPD LSSASTSPIH EKLMLSPLKL SREYSPIGLS  480
IAATAAAAKD EGEANWMPMF RDSSMGGPLG EALNKNNGGN MEAKNYLSAS LNLMTDAWDS  540
SPLESSPVGV LQRTAFGSVS SSTGSSPRQE YHGVYDGNPR DDLGSIVVNH PSIRLM

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK376067	0.0	AK376067.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3113P04.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020187288.1	0.0	growth-regulating factor 6-like
Swissprot	Q6AWY3	0.0	GRF6_ORYSJ; Growth-regulating factor 6
TrEMBL	A0A446RT17	0.0	A0A446RT17_TRITD; Uncharacterized protein
STRING	Traes_4BS_1B1F669A3.2	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4290	35	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	4e-46	growth-regulating factor 2

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Liu H, et al. OsmiR396d-regulated OsGRFs function in floral organogenesis in rice through binding to their targets OsJMJ706 and OsCR4. Plant Physiol., 2014. 165(1): p. 160-74 [PMID:24596329] Gao F, et al. Blocking miR396 increases rice yield by shaping inflorescence architecture. Nat Plants, 2015. 2: p. 15196 [PMID:27250748]