PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4BS_1751C4BBF.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | FAR1 | ||||||||
Protein Properties | Length: 253aa MW: 28006.1 Da PI: 4.6174 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 74.3 | 2.6e-23 | 119 | 240 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..................................tekerrtr 55 Yn+YA ++GFs+++++s+k ++g +k++fvC+k k+e ++ ++k+r++ Traes_4BS_1751C4BBF.2 119 HYNAYALQIGFSIKMNTSRKAVKTGVLIKQQFVCNKFRKPEADDGGaekilvlddiveqtkdddededivfldddnktkkRSKKRKRD 206 6************************************99999988899****************************999888888899 PP FAR1 56 aetrtgCkaklkvkkekdgkwevtkleleHnHela 90 + +tgCkak++vk+ dg+wev+ ++ eHnH+l+ Traes_4BS_1751C4BBF.2 207 KIVQTGCKAKMVVKLI-DGRWEVIYFVGEHNHPLV 240 999*************.****************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.3E-21 | 119 | 240 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MIDLNEEPND MDIGDPVNST QQAAQNPELT GDSPTPHIVQ NATAPVAKTV ETDEQAPVAQ 60 ESETDGHTLD GTDAAGDTSV TVGNGLTGFG AENDEEAWSQ PKEPHVGMRF DTLEGAKEHY 120 NAYALQIGFS IKMNTSRKAV KTGVLIKQQF VCNKFRKPEA DDGGAEKILV LDDIVEQTKD 180 DDEDEDIVFL DDDNKTKKRS KKRKRDKIVQ TGCKAKMVVK LIDGRWEVIY FVGEHNHPLV 240 DKPSLTKYLR SHQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020194049.1 | 4e-66 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A446X9H6 | 0.0 | A0A446X9H6_TRITD; Uncharacterized protein | ||||
STRING | Traes_4BS_1751C4BBF.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9528 | 8 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 2e-15 | FAR1-related sequence 5 |
Publications ? help Back to Top | |||
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