PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4BS_071700C53.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | GRAS | ||||||||
Protein Properties | Length: 588aa MW: 66319.8 Da PI: 6.8999 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 327.6 | 2.4e-100 | 205 | 576 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 ++lL++cAeavss+d + a++lL+r++ ++sp+gd+ qRla+yf+++L+arla+++s+ly+al ++t ++e ++a++l ++ Traes_4BS_071700C53.1 205 ETLLIRCAEAVSSNDVRGASKLLERIKWHSSPTGDAKQRLAHYFAQGLEARLAGTGSRLYRALMGKHTL---TVELIKAYHLHMAACC 289 789************************************************************999997...8*************** PP GRAS 90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvp 175 +k++ l a ++I +av+g +++Hi+ ++i+ G+QWp Ll+ La+R++gpp++RiTg++ p++g ++ +ee g+rL++ A+++gvp Traes_4BS_071700C53.1 290 SIKVGLLFAINTICKAVAGRRKLHIVHYGITTGFQWPDLLRLLANREGGPPQVRITGINTPRPGlrPAQIMEEAGDRLSNCARQFGVP 377 ***************************************************************9*99********************* PP GRAS 176 fefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerfleal 261 fef++ +a++led++ e+L+++p+E+l+Vn+ ++ +l+des++ + rd vL+ + +++P v+v + + ++++ F++rf +al Traes_4BS_071700C53.1 378 FEFRA-IASKLEDVRAEDLHIDPDEVLVVNSLYEFRTLMDESLTFDMvsLRDMVLNNISKMRPGVFVQSLVNGPYSAAFFMTRFRHAL 464 *****.7**********************************987655449************************************** PP GRAS 262 eyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgy 349 +y++alfd +e+++pr++++r vEr +++r++ n++acega+r+er +++++W++r e+aG++++pl+ +++ k ++ + + + Traes_4BS_071700C53.1 465 YYFTALFDVMENTVPRDNDQRLLVERDIFARSAINMIACEGADRVERPQNYKEWQARNERAGLRQLPLDPDVVLILKDQVKSRYHKHF 552 ************************************************************************************999* PP GRAS 350 rveeesgslvlgWkdrpLvsvSaW 373 ++ e++ +l++gWk+r L++ S W Traes_4BS_071700C53.1 553 MISEDHRWLLQGWKGRVLYAHSTW 576 ************************ PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 57.649 | 178 | 557 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 8.2E-98 | 205 | 576 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 588 aa Download sequence Send to blast |
MLTEEDIVDK FFYQYPDHPE LLQAEQPFAE ILADTSSDAH ESFASSTSIL MPSQVLNGTG 60 TGTGTVEPSG LVFPIPSESS TRTDMLSSMA FFKGMEEANR FLPADNVMVA GRGRKKRWSG 120 MDAETEAGLG RSSKQITALP RSVSEEEEET TALEMLDRLV LNGYDAHPGE MQEVVRVTLE 180 DKENKAAVGR RGRRGARHTV VTDLETLLIR CAEAVSSNDV RGASKLLERI KWHSSPTGDA 240 KQRLAHYFAQ GLEARLAGTG SRLYRALMGK HTLTVELIKA YHLHMAACCS IKVGLLFAIN 300 TICKAVAGRR KLHIVHYGIT TGFQWPDLLR LLANREGGPP QVRITGINTP RPGLRPAQIM 360 EEAGDRLSNC ARQFGVPFEF RAIASKLEDV RAEDLHIDPD EVLVVNSLYE FRTLMDESLT 420 FDMVSLRDMV LNNISKMRPG VFVQSLVNGP YSAAFFMTRF RHALYYFTAL FDVMENTVPR 480 DNDQRLLVER DIFARSAINM IACEGADRVE RPQNYKEWQA RNERAGLRQL PLDPDVVLIL 540 KDQVKSRYHK HFMISEDHRW LLQGWKGRVL YAHSTWVVEW HLFVQSCC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 6e-42 | 208 | 576 | 8 | 374 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK375062 | 0.0 | AK375062.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3084L15. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020172176.1 | 0.0 | scarecrow-like protein 9 | ||||
TrEMBL | A0A3B6JJ18 | 0.0 | A0A3B6JJ18_WHEAT; Uncharacterized protein | ||||
STRING | Traes_4BS_071700C53.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP231 | 31 | 297 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 1e-128 | GRAS family protein |
Publications ? help Back to Top | |||
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