PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4BS_05D2F0613.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | bHLH | ||||||||
Protein Properties | Length: 168aa MW: 18704.5 Da PI: 12.0386 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 24 | 7e-08 | 93 | 128 | 5 | 45 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLe 45 ++ E+rRR+r N+++ L++l+P++ K +Ka++L Traes_4BS_05D2F0613.2 93 NKLSEKRRRSRTNEKMKALQSLIPNS-----NKTDKASMLD 128 5678*********************7.....5888888885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.185 | 88 | 137 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.30E-6 | 91 | 129 | No hit | No description |
SuperFamily | SSF47459 | 3.01E-9 | 92 | 129 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.0E-5 | 93 | 127 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.5E-4 | 94 | 143 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.4E-8 | 94 | 129 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
MRAAIPPHWV VDERGARQAA APGGRLRGAR GRRRRRFLRE RSGRVVREPE PEPLAAGDRP 60 RGGSGSKRTR AARGGRPPAR GIQQQANPCL RVNKLSEKRR RSRTNEKMKA LQSLIPNSNK 120 TDKASMLDEH KRSAGDFFDV HEFAVLLVCC AASARLVPIY NLEEPVAL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK374787 | 6e-40 | AK374787.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3076F24. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003561052.2 | 2e-20 | transcription factor SPATULA | ||||
Refseq | XP_014752502.1 | 2e-20 | transcription factor SPATULA | ||||
TrEMBL | A0A3B6ILX9 | 3e-86 | A0A3B6ILX9_WHEAT; Uncharacterized protein | ||||
STRING | Traes_4BS_05D2F0613.2 | 1e-117 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3336 | 37 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36930.1 | 5e-16 | bHLH family protein |
Publications ? help Back to Top | |||
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