PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4BL_FE8B8ABC4.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 191aa MW: 21363.3 Da PI: 8.0856 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.6 | 1.2e-17 | 28 | 75 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT +Ed+ l+++++ +G g+W++ ar g++Rt+k+c++rw++yl Traes_4BL_FE8B8ABC4.1 28 RGPWTVDEDLTLINYIADHGEGRWNALARAAGLRRTGKSCRLRWLNYL 75 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 30.5 | 8.4e-10 | 81 | 124 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T++E++l++d++ ++G++ ++ gRt++++k++w++ Traes_4BL_FE8B8ABC4.1 81 RGNFTADEQLLILDLHSRWGNR-XXXXXXXLP-GRTDNEIKNYWRT 124 89********************.88889****.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.556 | 23 | 79 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.17E-26 | 26 | 122 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-14 | 27 | 77 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.0E-16 | 28 | 75 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.5E-23 | 29 | 82 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.75E-12 | 30 | 75 | No hit | No description |
PROSITE profile | PS51294 | 10.163 | 80 | 130 | IPR017930 | Myb domain |
SMART | SM00717 | 8.6E-6 | 80 | 128 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-7 | 81 | 124 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.0E-17 | 83 | 129 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MASVTEDPAV RSSNSMAAEP EEEAELRRGP WTVDEDLTLI NYIADHGEGR WNALARAAGL 60 RRTGKSCRLR WLNYLRPDVK RGNFTADEQL LILDLHSRWG NRXXXXXXXL PGRTDNEIKN 120 YWRTRVQKHA KQLNCDVGSA TFKDAMRYLW MPHLVERIHA AAATAGGDPT MGDTSCASGV 180 TSMAATATTY P |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 5e-23 | 25 | 122 | 24 | 120 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in the jasmonate-dependent defense responses to the rice blast fungus Magnaporthe oryzae. Does not seem to function in the salicylic acid-dependent signaling pathway. {ECO:0000269|PubMed:11310740}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA), wounding and infection by the fungal pathogen Magnaporthe oryzae. {ECO:0000269|PubMed:11310740}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT009018 | 1e-135 | BT009018.1 Triticum aestivum clone wdk3c.pk006.n12:fis, full insert mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020155473.1 | 1e-108 | transcription factor MYB108-like | ||||
Swissprot | Q2QZJ8 | 1e-93 | JAMYB_ORYSJ; Transcription factor JAMYB | ||||
TrEMBL | W5EEJ8 | 1e-117 | W5EEJ8_WHEAT; MYB transcription factor 82 | ||||
STRING | Traes_4BL_FE8B8ABC4.1 | 1e-133 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP198 | 38 | 330 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49620.1 | 1e-62 | myb domain protein 78 |