PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4BL_F7A02A7FD.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | E2F/DP | ||||||||
Protein Properties | Length: 254aa MW: 28528.9 Da PI: 4.826 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 77.4 | 1.4e-24 | 1 | 79 | 14 | 71 |
E2F_TDP 14 lklleksee.givtlnevakeLvse.....................dvknkrRRiYDilNVLealnliekkekneirwkg 71 +k++ek+e+ g++t+neva+eLv+e d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg Traes_4BL_F7A02A7FD.1 1 MKVCEKVESkGRTTYNEVADELVAEftdpnnnieppdpdnpnaqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 79 589****999************************************************************.*******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF009404 | 7.8E-105 | 1 | 252 | IPR015648 | Transcription factor DP |
SuperFamily | SSF46785 | 1.63E-17 | 1 | 80 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 1.0E-38 | 1 | 84 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 9.2E-28 | 1 | 79 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 8.1E-22 | 1 | 79 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
CDD | cd14458 | 2.06E-36 | 84 | 187 | IPR014889 | Transcription factor DP, C-terminal |
SMART | SM01138 | 7.7E-76 | 86 | 250 | IPR014889 | Transcription factor DP, C-terminal |
SuperFamily | SSF144074 | 2.51E-39 | 86 | 196 | No hit | No description |
Pfam | PF08781 | 1.2E-39 | 87 | 222 | IPR014889 | Transcription factor DP, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007049 | Biological Process | cell cycle | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MKVCEKVESK GRTTYNEVAD ELVAEFTDPN NNIEPPDPDN PNAQQYDEKN IRRRVYDALN 60 VLMAMDIISK DKKEIQWKGL PRTSINDIEE LQADLAGVKG RIEKKSAYLQ ELQDQYLGMQ 120 NLINRNEQLY GSGNIPSGGV ALPFILIQTR PHATVEVEIS EDMQLVHFDF NTTPFELHDD 180 SYVLKALNSY GKEENAGTSE PISNGCEGSS TPNFYRHQIQ QSAMASNGTN RLPSSPPPPV 240 PGILKGRVKH EHLY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_B | 3e-32 | 1 | 84 | 17 | 93 | PROTEIN (TRANSCRIPTION FACTOR DP-2) |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020169029.1 | 0.0 | transcription factor-like protein DPB isoform X1 | ||||
Swissprot | Q9FNY2 | 1e-104 | DPB_ARATH; Transcription factor-like protein DPB | ||||
TrEMBL | A0A446SCT9 | 0.0 | A0A446SCT9_TRITD; Uncharacterized protein | ||||
STRING | Traes_4BL_F7A02A7FD.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1283 | 38 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03415.1 | 1e-102 | Transcription factor DP |
Publications ? help Back to Top | |||
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