PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4BL_F0B0E6B0A.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | FAR1 | ||||||||
Protein Properties | Length: 674aa MW: 78237.6 Da PI: 6.9716 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 57.1 | 6.1e-18 | 64 | 149 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fY++YA++ GF v ++++++ +++ t t+ C+++gk++ + k+ + +++++tr++C ak + +++ +++++t++ leHnH+ Traes_4BL_F0B0E6B0A.2 64 RFYKAYARKKGFGVIRRTTRHG-EDKMLTYFTLACNRQGKAQFSAKN---SFKPNPSTRMQCPAKSNFSRR-GENFCITTVTLEHNHP 146 5**************9998887.7888****************9998...999*****************9.9**************9 PP FAR1 89 lap 91 ++p Traes_4BL_F0B0E6B0A.2 147 ISP 149 875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.1E-15 | 64 | 149 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 5.4E-35 | 266 | 360 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.433 | 555 | 593 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 4.2E-4 | 563 | 589 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 2.9E-4 | 568 | 595 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 674 aa Download sequence Send to blast |
MEPDLTLDEV AEQNRSAPDE EDEDAFIVEE IGDSSDDRQR QAEPTVMLEP KKGMMFSSED 60 DAVRFYKAYA RKKGFGVIRR TTRHGEDKML TYFTLACNRQ GKAQFSAKNS FKPNPSTRMQ 120 CPAKSNFSRR GENFCITTVT LEHNHPISPS KARFLRCHKK VDLHSKRRLE LNDQAGARMN 180 TNFGSPVMEA GNLEFGEKEC TNYLQEKRSL KLGAGDAHAL YQYFLRMQSK DPAFFHVMDV 240 AEDGRLRNVF WADARSRAAY ESYWDVITFD TTYLTNKYRI PLATFVGVNH HGESVLLGCG 300 LLSNEDTETF VWLFKSWLCC MSCKPPNAIV TDQCKPMQNA IEEVFPQARH RWCTCHIMKK 360 IPENLSGYEN IKSSLSNVVY DSLTKHGFDK AWVEMINKYD LQDNEWLAGL YDNKNLWVPA 420 YVKDTFWAGM SSTKRSESVN AFFDGYVNAR TTLKQFVEQY ENALREKVEK ENKADSKSFQ 480 EQIPCITHYD FERQFQAAYT TAKFKEFQDQ LRGKIYCYPT QLNKEGSVFT FGVREDSKIF 540 CEGEDGKRKE KRVILEFIVL FNQGECDVQC MCRLFEFRGI LCSHIISVLA LMEITDVPSR 600 YILQRWRKDI KRKHTFVRCF YDDMIDTQVV QRYDNLCKHS HEVAENGAES DALHDLVMDG 660 LNELQRKIDA YRAR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ389711 | 1e-170 | HQ389711.1 Triticum aestivum clone UCDTA00162 genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020171732.1 | 0.0 | protein FAR-RED IMPAIRED RESPONSE 1-like isoform X2 | ||||
Refseq | XP_020171733.1 | 0.0 | protein FAR-RED IMPAIRED RESPONSE 1-like isoform X2 | ||||
Refseq | XP_020171734.1 | 0.0 | protein FAR-RED IMPAIRED RESPONSE 1-like isoform X2 | ||||
Refseq | XP_020171735.1 | 0.0 | protein FAR-RED IMPAIRED RESPONSE 1-like isoform X2 | ||||
TrEMBL | A0A446SE87 | 0.0 | A0A446SE87_TRITD; Uncharacterized protein | ||||
STRING | Traes_4BL_F0B0E6B0A.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G15090.1 | 1e-126 | FAR1 family protein |
Publications ? help Back to Top | |||
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