PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4BL_E20E75836.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 537aa    MW: 59579.9 Da    PI: 6.2776
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4BL_E20E75836.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS414.11.2e-1261665361373
                   GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 
                            l++++++c +av++++ +  + l+++l++++s +g+pmqRl ay++e+L ar +++++ lyk+l+++e ++ + se +++++l+++++
  Traes_4BL_E20E75836.1 166 LKQVIVACGKAVDENNCH-EELLISELQKMVSVSGEPMQRLGAYMLEGLVARRYSTGHALYKSLKCKEPQP-TNSELMSYMHLLYDIC 251
                            578999******996655.58899********************************************986.567888999******* PP

                   GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgv 174
                            P++kf+++ aN aI eav+ge+ +HiiDf+i qG QW++++qaLa+R++gpp lRiTg+++++s   +   l  +g++L ++A+++++
  Traes_4BL_E20E75836.1 252 PFFKFGYMSANGAIAEAVKGENFIHIIDFQIAQGSQWVTMIQALAARASGPPCLRITGIDDSDSAyaRGGGLDIVGRKLYSVAQSCRL 339
                            *************************************************************988899999****************** PP

                   GRAS 175 pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262
                            pfefn+ v+ + ++++le+L++++gEa+aVn+++qlh+++desv++e++rd++L++vkslsP vv++veqea++n+++F+ r +e+l+
  Traes_4BL_E20E75836.1 340 PFEFNA-VHAASHEVTLEHLDIRKGEAIAVNFAYQLHHTPDESVCIENHRDRILRMVKSLSPSVVTLVEQEANTNTAPFFSRYMETLD 426
                            ******.79999**************************************************************************** PP

                   GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyr 350
                            yy+a+f+++++  +r++++r++ E+++++r+ivn++acegaer+erhe ++kWr+rl +aGF+p+pls  +++++++ll++++s  y+
  Traes_4BL_E20E75836.1 427 YYTAMFEAIDVACSRDDKKRMSTEQHCVARDIVNLIACEGAERVERHEPFGKWRSRLAMAGFRPYPLSALVNNTIRTLLNNYNSY-YK 513
                            ***********************************************************************************66.** PP

                   GRAS 351 veeesgslvlgWkdrpLvsvSaW 373
                            +ee++g ++lgWk+r+Lv+ SaW
  Traes_4BL_E20E75836.1 514 LEEKDGVIYLGWKNRKLVVSSAW 536
                            *********************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.677140518IPR005202Transcription factor GRAS
PfamPF035144.2E-124166536IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MSAKASNMSY RYPDNSQIPY YSSSMHVGGN GTCYVQQNHE GHHYMSSDDG SQNSDSKSQV  60
IHPQYSTLES SSANCVYAVN SSTSPQCISG SHISLHDSHS DHTYDSPASG ITEVPGLGFT  120
TLQELADALF GSDSDAVSSD RSSLVIGAAM HQSNWRELLG ISSGDLKQVI VACGKAVDEN  180
NCHEELLISE LQKMVSVSGE PMQRLGAYML EGLVARRYST GHALYKSLKC KEPQPTNSEL  240
MSYMHLLYDI CPFFKFGYMS ANGAIAEAVK GENFIHIIDF QIAQGSQWVT MIQALAARAS  300
GPPCLRITGI DDSDSAYARG GGLDIVGRKL YSVAQSCRLP FEFNAVHAAS HEVTLEHLDI  360
RKGEAIAVNF AYQLHHTPDE SVCIENHRDR ILRMVKSLSP SVVTLVEQEA NTNTAPFFSR  420
YMETLDYYTA MFEAIDVACS RDDKKRMSTE QHCVARDIVN LIACEGAERV ERHEPFGKWR  480
SRLAMAGFRP YPLSALVNNT IRTLLNNYNS YYKLEEKDGV IYLGWKNRKL VVSSAWW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-591635361374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2517040.0AK251704.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf124m13, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020156010.10.0scarecrow-like protein 21
SwissprotQ8GVE10.0CIGR2_ORYSJ; Chitin-inducible gibberellin-responsive protein 2
TrEMBLA0A3B6IUD80.0A0A3B6IUD8_WHEAT; Uncharacterized protein
STRINGTraes_4BL_E20E75836.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151337117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]
  3. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  4. Tanabe S, et al.
    The elicitor-responsive gene for a GRAS family protein, CIGR2, suppresses cell death in rice inoculated with rice blast fungus via activation of a heat shock transcription factor, OsHsf23.
    Biosci. Biotechnol. Biochem., 2016. 80(1): p. 145-51
    [PMID:26287768]