PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4BL_DCD5FA440.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 682aa    MW: 75493.8 Da    PI: 7.4572
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4BL_DCD5FA440.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1865.8e-2739129188
                   FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 
                            +fY+ YA+++GF++r+s+ ++s+r+++i++r+ vCskeg++e+++ +    ++++++r+ tr+gCka++++kk   gkw+vtk+++ H
  Traes_4BL_DCD5FA440.1  39 EFYSLYARHAGFRIRISRYTRSRRDNSIISRRIVCSKEGFHETRNCEglhPDQKQQERTGTRVGCKAMIMIKKIGPGKWVVTKFVKTH 126
                            6*******************************************9999999999********************************** PP

                   FAR1  86 nHe 88 
                            nH 
  Traes_4BL_DCD5FA440.1 127 NHG 129
                            **6 PP
2FAR189.45e-28177269290
                   FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 
                            fY +YA+  GF+ r+s+  +s+r+++i++r+ vCskeg+re + kk    + k++r+r+ tr+gCka+++vkk+++gkw+v+k+e+eH
  Traes_4BL_DCD5FA440.1 177 FYINYARLNGFRARISRYCRSRRDNSIISRQIVCSKEGFREVRAKKeitdEGKTKRPRMITRVGCKAMIVVKKMNSGKWMVSKFEKEH 264
                            9*****************************************99999998899999******************************** PP

                   FAR1  86 nHela 90 
                            nH+l 
  Traes_4BL_DCD5FA440.1 265 NHSLL 269
                            **996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.4E-2439129IPR004330FAR1 DNA binding domain
PfamPF031015.0E-26177269IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 682 aa     Download sequence    Send to blast
MEISSNEPSE VENIIGHEDD TELTPREGME FESEDAAREF YSLYARHAGF RIRISRYTRS  60
RRDNSIISRR IVCSKEGFHE TRNCEGLHPD QKQQERTGTR VGCKAMIMIK KIGPGKWVVT  120
KFVKTHNHGS VPPRKLDIRS AHQDLNPIEK PHSTEVNPVD EPVEGMEFDS EEAAKLFYIN  180
YARLNGFRAR ISRYCRSRRD NSIISRQIVC SKEGFREVRA KKEITDEGKT KRPRMITRVG  240
CKAMIVVKKM NSGKWMVSKF EKEHNHSLLS SKQAPSTSNI TSGENAESAA KSSDPDEAKV  300
EEYSAGIQCN STDSLTVLYN KLCQEAIKFA KEGSVTEEIY HVAMSALKEA AEKVAQVKSC  360
HPIMPHRGVS GSESKHKVVQ MKTMSASQCS DVAKQKTIPS QLTMFQESTS KLMFIPTNLL  420
TDSGLANSDN NHPSSCAFTS SGRQGRHGSE CSYLHAENRK EGCPEKYQNS TSSRATQGNH  480
STYHGHSEET TVAIPAIPLT LYMPLSRNSP GASADGQYKL LAAPIEAVPI SYRPAEPIRQ  540
PKRSFCNLGP LPGVMSELTR REKGPHPLVH ATALACGARV VPVEEAASLI KAIESKIRSG  600
GAKIARLPSS RLTRLVPEAV SMSSSSEDGE ENDHSEPPAV NVEGYCHDDQ ISEEMKLQGE  660
ASELETDSEN CSGHENHDTA DC
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020176088.10.0uncharacterized protein LOC109761678
TrEMBLA0A446S9230.0A0A446S923_TRITD; Uncharacterized protein
STRINGTraes_4BL_DCD5FA440.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90313345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07500.12e-30FAR1 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]