PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4BL_D9784B20C1.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 319aa    MW: 34795 Da    PI: 9.2114
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4BL_D9784B20C1.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B398.63.9e-3141145199
                             EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                             f+kv tpsdv+k++rlv+pk++ae++     +++ ++  l++ed+ g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F 
  Traes_4BL_D9784B20C1.1  41 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldTSSTDKGLLLSFEDRAGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFG 127
                             89**************************99666678899************************************************ PP

                             E-.SS.SEE..EEEEE-S CS
                      B3  84 ld.gr.sefelvvkvfrk 99 
                             +  g+  +++l++ ++r+
  Traes_4BL_D9784B20C1.1 128 RGvGEaARGRLFIDWRRR 145
                             6658889999**999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.8E-4130145IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.58E-2938143IPR015300DNA-binding pseudobarrel domain
CDDcd100174.48E-2639126No hitNo description
SMARTSM010198.9E-2241146IPR003340B3 DNA binding domain
PROSITE profilePS5086314.21241146IPR003340B3 DNA binding domain
PfamPF023623.2E-2841145IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MEFTAIRAST AAAAGCSSPP PTADHKAEEE AAGAVEKEHM FDKVVTPSDV GKLNRLVIPK  60
QHAEKYFPLD TSSTDKGLLL SFEDRAGKPW RFRYSYWNSS QSYVMTKGWS RFVKEKRLDA  120
GDTVSFGRGV GEAARGRLFI DWRRRPDVVL PPGHHRGFAL PSVPFSPWMA HPAGPGGAGG  180
RMFLQATSPA TLYDYDAYQH HHQRRHIGYD GYGAAPGRQV VYYQPQQQYH HQHPSLVLES  240
VPVRMSMAAA PAHPEPSAVA TSGSKRVRLF GVNLECAADA EEDFSGPGRT ATTALQLLSP  300
ASSSSSSSGK ARCSLNLDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A5e-63361483116B3 domain-containing transcription factor NGA1
5os9_B5e-63361483116B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3666010.0AK366601.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2044K15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020197119.10.0B3 domain-containing protein Os03g0120900-like
SwissprotQ8LMR91e-113Y3209_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBLA0A3B6IZF20.0A0A3B6IZF2_WHEAT; Uncharacterized protein
STRINGTraes_4BL_D9784B20C1.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.13e-68B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]