PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_4BL_D592DBAAF.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

NAC

Protein Properties

Length: 691aa MW: 76059.5 Da PI: 6.157

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_4BL_D592DBAAF.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	181.7	1.8e-56	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 lppGfrFhPtdeel+ +yLk k++g+++el e+i+evd+yk+ePwdLp k + +++ ewyfFs+rd+ky++g+r+nratk+gyWkat Traes_4BL_D592DBAAF.1 6 LPPGFRFHPTDEELIIYYLKSKINGRQIEL-EIIPEVDLYKCEPWDLPeKsFLPSKDLEWYFFSPRDRKYPNGSRTNRATKAGYWKAT 92 79**************************.99**********95334455777************************** PP NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 gkd++v s ++++vg+kktLv+y+grap+g++tdWvmheyrl Traes_4BL_D592DBAAF.1 93 GKDRKVNS-QKRAVGMKKTLVYYRGRAPHGSRTDWVMHEYRL 133 ****.9999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.75E-63	4	156	IPR003441	NAC domain
PROSITE profile	PS51005	61.223	6	156	IPR003441	NAC domain
Pfam	PF02365	3.5E-29	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 691 aa Download sequence Send to blast
MAPVSLPPGF RFHPTDEELI IYYLKSKING RQIELEIIPE VDLYKCEPWD LPEKSFLPSK 60 DLEWYFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVNS QKRAVGMKKT LVYYRGRAPH 120 GSRTDWVMHE YRLDERECEI DNGLQDAYAL CRIFKKTAPG PKIMEHYGAA QYHGEPPQWT 180 PSSVERSPTP CDGRGGGDDF ESSSFSFPTE APMTSGSMHG GGFGMQMIGG MPQEDGRWMQ 240 FLSEDAFNAT NPYFMNPAAA SNFSCLPSKV DVALECARLQ HRLTLPPLEV EDFPHDVSLD 300 TKTGILQSNP NEVDILQEFL SVASASQELI NGSGSSSYPD MWLGAGTSSG GGHYMNELSS 360 LVDLGAAKAK EEVDNFYHMC GIGASMTRRD DEPGRLVEIS DMQEFKEEKK RPVENLRGVK 420 LVNNDLGEIV VEGDESNPAE GITHYPIQDT AENSGEAGHH MTDHTTDEGG IDTAPIFSQS 480 QPDDFALAIG FGNDGDDNTD PNASFDLYGK VDVQRGLFVS RVGAAKTFFH RIEPPKKVSF 540 HLNPAASEVS KAIEKFHYLP VTSKVSGSGS SSSRVSVFGK VKALIRGKFP TMRRPPSPQR 600 QRPEATVSEL LQIVSLLLAP KEAVAEREEE MARKKAKPGR RGCDGGCSSS WQLGLPGKGS 660 KGISSMFLSG KWAFLTSALA AVRAPGPCNH F

Sequence ? help Back to Top

Protein Sequence Length: 691 aa Download sequence Send to blast

MAPVSLPPGF RFHPTDEELI IYYLKSKING RQIELEIIPE VDLYKCEPWD LPEKSFLPSK  60
DLEWYFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVNS QKRAVGMKKT LVYYRGRAPH  120
GSRTDWVMHE YRLDERECEI DNGLQDAYAL CRIFKKTAPG PKIMEHYGAA QYHGEPPQWT  180
PSSVERSPTP CDGRGGGDDF ESSSFSFPTE APMTSGSMHG GGFGMQMIGG MPQEDGRWMQ  240
FLSEDAFNAT NPYFMNPAAA SNFSCLPSKV DVALECARLQ HRLTLPPLEV EDFPHDVSLD  300
TKTGILQSNP NEVDILQEFL SVASASQELI NGSGSSSYPD MWLGAGTSSG GGHYMNELSS  360
LVDLGAAKAK EEVDNFYHMC GIGASMTRRD DEPGRLVEIS DMQEFKEEKK RPVENLRGVK  420
LVNNDLGEIV VEGDESNPAE GITHYPIQDT AENSGEAGHH MTDHTTDEGG IDTAPIFSQS  480
QPDDFALAIG FGNDGDDNTD PNASFDLYGK VDVQRGLFVS RVGAAKTFFH RIEPPKKVSF  540
HLNPAASEVS KAIEKFHYLP VTSKVSGSGS SSSRVSVFGK VKALIRGKFP TMRRPPSPQR  600
QRPEATVSEL LQIVSLLLAP KEAVAEREEE MARKKAKPGR RGCDGGCSSS WQLGLPGKGS  660
KGISSMFLSG KWAFLTSALA AVRAPGPCNH F

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-54	1	162	12	171	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-54	1	162	12	171	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-54	1	162	12	171	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-54	1	162	12	171	NO APICAL MERISTEM PROTEIN
3swm_A	6e-54	1	162	15	174	NAC domain-containing protein 19
3swm_B	6e-54	1	162	15	174	NAC domain-containing protein 19
3swm_C	6e-54	1	162	15	174	NAC domain-containing protein 19
3swm_D	6e-54	1	162	15	174	NAC domain-containing protein 19
3swp_A	6e-54	1	162	15	174	NAC domain-containing protein 19
3swp_B	6e-54	1	162	15	174	NAC domain-containing protein 19
3swp_C	6e-54	1	162	15	174	NAC domain-containing protein 19
3swp_D	6e-54	1	162	15	174	NAC domain-containing protein 19
4dul_A	5e-54	1	162	12	171	NAC domain-containing protein 19
4dul_B	5e-54	1	162	12	171	NAC domain-containing protein 19
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00212	DAP	Transfer from AT1G65910	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020190976.1	0.0	uncharacterized protein LOC109776722
TrEMBL	A0A3B6IVN2	0.0	A0A3B6IVN2_WHEAT; Uncharacterized protein
STRING	Traes_4BL_D592DBAAF.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6624	36	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65910.1	1e-127	NAC domain containing protein 28

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]