PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4BL_D44ACD58E.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | LBD | ||||||||
Protein Properties | Length: 61aa MW: 6708.8 Da PI: 10.4759 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 36.6 | 1.3e-11 | 17 | 60 | 1 | 39 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGa 39 +C++C+vlr++Ca+dC+++p++ p++q++++ +++k++G+ Traes_4BL_D44ACD58E.1 17 SCNGCRVLRKGCADDCTIRPCLawirsPDAQANATVFLAKFYGR 60 6*************************999**************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 9.759 | 16 | 61 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.2E-8 | 17 | 60 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 61 aa Download sequence Send to blast |
TFRGGKKEAR PTTMRASCNG CRVLRKGCAD DCTIRPCLAW IRSPDAQANA TVFLAKFYGR 60 A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK373051 | 3e-48 | AK373051.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3019B19. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020199212.1 | 9e-28 | LOB domain-containing protein 41-like | ||||
Refseq | XP_021998462.1 | 1e-27 | LOB domain-containing protein 41-like | ||||
Swissprot | Q9M886 | 1e-25 | LBD41_ARATH; LOB domain-containing protein 41 | ||||
TrEMBL | A0A453J8E5 | 4e-27 | A0A453J8E5_AEGTS; Uncharacterized protein | ||||
STRING | Traes_4BL_D44ACD58E.1 | 9e-38 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1235 | 37 | 127 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 4e-28 | LOB domain-containing protein 41 |
Publications ? help Back to Top | |||
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