PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_4BL_C8067812A.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

FAR1

Protein Properties

Length: 293aa MW: 32215.2 Da PI: 5.7673

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_4BL_C8067812A.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	29.5	2.5e-09	108	183	5	90
FAR1 5 eYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 e+A++ GF +r ks+ + +++ +++ vC + gk+ e+++ + r++C a +++ ++kd+ w+v++ + HnH+l+ Traes_4BL_C8067812A.2 108 EFAEHPGFGIRYGKSRLN-VSRTKCMQDIVCGCAGKPIVENTR---------SCRCECPALIRLLRTKDNGWYVAEHRDGHNHALS 183 7999********9998.445568899***99886555.........99****************************97 PP
2	FAR1	24.2	1.1e-07	239	280	49	90
FAR1 49 ekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 + +++ + r++C a +++ + +d+ w++++ ++ HnH+l+ Traes_4BL_C8067812A.2 239 KAGVENTRSCRCECPALIRLLRAEDNGWYIAEHRESHNHSLS 280 4567889999*****************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.7E-6	108	183	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	1.1E-4	239	280	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MEFLLQPLNS RTFLEEVNDN NGAMEPVRFP VSAVAEVEDP APAASSADGQ ICGAEAAGAD 60 MAQCSEHSME QIDPKTPGRT QRVHVGAAAL RRPPCPDRVT ALEKTDREFA EHPGFGIRYG 120 KSRLNVSRTK CMQDIVCGCA GKPIVENTRS CRCECPALIR LLRTKDNGWY VAEHRDGHNH 180 ALSQTYGQTI HWPTAVSAEA RICVMDTAAV VNEGQLASGL GALNWKDEST CFYLELEDKA 240 GVENTRSCRC ECPALIRLLR AEDNGWYIAE HRESHNHSLS LNLDLKLHCI SGD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020178289.1	9e-79	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A446S776	0.0	A0A446S776_TRITD; Uncharacterized protein
STRING	Traes_4BL_C8067812A.2	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP619	19	91

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]