PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4BL_BEF6AF501.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | bHLH | ||||||||
Protein Properties | Length: 230aa MW: 25541.3 Da PI: 8.6945 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 16.9 | 1.1e-05 | 35 | 83 | 5 | 52 |
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIk 52 ++e E+ RR+r++ e+L +l+P + + ++ L YIk Traes_4BL_BEF6AF501.2 35 KKESEKERRKRMKGLCEKLASLIPReHCCSSTDTMTQLGSLDVGASYIK 83 6899********************9554233333444444444444444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 9.4E-10 | 35 | 99 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.22E-8 | 36 | 99 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MNACALNSME MKAKPARGGK RSRASGGTAV VLLEKKESEK ERRKRMKGLC EKLASLIPRE 60 HCCSSTDTMT QLGSLDVGAS YIKKLKERVD ELQRRRSSVQ AFDTLKGDTS IPTPTTTTTT 120 SSGPGSPEEE KAWEASEPVL QVRQHDDSSM EVRLICCMER PIKLHEVITI HEEEGAEIIN 180 ANHSVAGHKM FYTIHSRVSI PRFSLLLLQL ANISAKCMAH KSLKDSSFEQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK248746 | 0.0 | AK248746.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf7p01, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020177071.1 | 1e-120 | uncharacterized protein LOC109762608 | ||||
TrEMBL | A0A446SJ88 | 1e-169 | A0A446SJ88_TRITD; Uncharacterized protein | ||||
STRING | Traes_4BL_BEF6AF501.2 | 1e-170 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP829 | 36 | 133 |
Publications ? help Back to Top | |||
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