PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4BL_BE3E058A6.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HD-ZIP
Protein Properties Length: 325aa    MW: 35734.1 Da    PI: 9.4022
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4BL_BE3E058A6.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.93.6e-18116165756
                            --HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
               Homeobox   7 ftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                            ++ eq+++Le+ Fe  +++  e++ +LA+ lgL+ rqV +WFqNrRa++k
  Traes_4BL_BE3E058A6.1 116 LNVEQVRTLEKNFEVANKLEPERKMQLARALGLQPRQVAIWFQNRRARWK 165
                            6789*********************************************9 PP
2HD-ZIP_I/II1261.6e-40114201491
            HD-ZIP_I/II   4 rrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                             rl+ eqv++LE++Fe  +kLeperK++lar+Lglqprqva+WFqnrRAR+ktkqlEkdy++Lkr++da+k+en++L +++++L++e+
  Traes_4BL_BE3E058A6.1 114 XRLNVEQVRTLEKNFEVANKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDVLKRQFDAVKAENDALLSHNKKLQSEI 201
                            59***********************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.022107167IPR001356Homeobox domain
SMARTSM003891.4E-14109171IPR001356Homeobox domain
SuperFamilySSF466891.2E-17111169IPR009057Homeodomain-like
CDDcd000861.39E-14115168No hitNo description
Gene3DG3DSA:1.10.10.602.5E-19116174IPR009057Homeodomain-like
PfamPF000461.7E-15116165IPR001356Homeobox domain
PRINTSPR000311.1E-5138147IPR000047Helix-turn-helix motif
PROSITE patternPS000270142165IPR017970Homeobox, conserved site
PRINTSPR000311.1E-5147163IPR000047Helix-turn-helix motif
PfamPF021831.3E-15167206IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MAWRPLPPPS SLRISSSTCS KHHRSMTPKN TTSSTTTTTM STTSLLPIPS TTPSSPPPNA  60
PPSRTSVAVC RQCWGSARRC TGAAATGAAA ATRXXXXXXX XXXXXXXXXX XXXXRLNVEQ  120
VRTLEKNFEV ANKLEPERKM QLARALGLQP RQVAIWFQNR RARWKTKQLE KDYDVLKRQF  180
DAVKAENDAL LSHNKKLQSE ILGLKGCREA ASELINLNKE TEASCSNRSE NSSEINLDIS  240
RTPPSDGPMD APPSHQQGGG GGGMIPFYPS VARPAGVDID HLLHASVPKM EHHHGGPDTP  300
SFGNLLCGVD EPPPFWPWAD HQQFN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1159167RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ3538560.0DQ353856.1 Triticum aestivum homeodomain-leucine zipper transcription factor TaHDZipI-2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020188842.11e-154homeobox-leucine zipper protein HOX21-like isoform X2
SwissprotQ8S7W91e-112HOX21_ORYSJ; Homeobox-leucine zipper protein HOX21
TrEMBLA0A446SE151e-156A0A446SE15_TRITD; Uncharacterized protein
STRINGTraes_4BL_BE3E058A6.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22893894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.16e-71HD-ZIP family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]