PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_4BL_A4D0F4AD6.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

LBD

Protein Properties

Length: 288aa MW: 30399.6 Da PI: 7.2885

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_4BL_A4D0F4AD6.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	125.2	3.3e-39	53	153	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 +C aCk+lrrkCa++Cv+apyf++eq +++fa++hk+FGasnv+kll++lp ++r +a+ ++ yeA+ar+rdPvyG+v++i++lqqq+ Traes_4BL_A4D0F4AD6.2 53 PCGACKFLRRKCARGCVFAPYFCHEQgAAHFAAIHKVFGASNVSKLLAHLPISDRAEAAVTVSYEAQARLRDPVYGCVAHIFALQQQV 140 7***********************89******************************************************** PP DUF260 88 eqlkaelallkee 100 ++l+a+la+lk++ Traes_4BL_A4D0F4AD6.2 141 MTLQAQLASLKAH 153 ******99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.328	52	154	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.4E-37	53	151	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MALGRPLHSN HHHHHQQQRS PRHRRETTQS VPSPSDPGII TGRLMSMTGL GSPCGACKFL 60 RRKCARGCVF APYFCHEQGA AHFAAIHKVF GASNVSKLLA HLPISDRAEA AVTVSYEAQA 120 RLRDPVYGCV AHIFALQQQV MTLQAQLASL KAHAPPAPQG VQHQNDVKGY VGGGGADQYA 180 HGGYQWPNGN GVGAAAAQQQ CAYGGNGGAA AGHDSISALL AGSAASDYMM YHALEQSASD 240 DDGHAAAAGF EAADQSSFGT EESGWRSSSG YQDCEDLQSV AYAYLNRS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-34	46	147	4	104	LOB family transfactor Ramosa2.1
5ly0_B	2e-34	46	147	4	104	LOB family transfactor Ramosa2.1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as positive regulator of adventitious (crown) root formation by promoting its initiation (PubMed:15829602, PubMed:15960615). Acts as positive regulator of lateral root formation. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1 (PubMed:15829602). Involved in auxin-mediated cell dedifferentiation, and may promote the initial cell division in the pericycle cells adjacent to the peripheral vascular cylinder at the base of the stem (PubMed:15960615). May act upstream of the gene regulatory network controlling adventitious root (crown) development (PubMed:21806801). {ECO:0000269\|PubMed:15829602, ECO:0000269\|PubMed:15960615, ECO:0000269\|PubMed:21806801}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by auxin (PubMed:15829602, PubMed:15960615). Induced by ethylene (PubMed:15960615). {ECO:0000269\|PubMed:15829602, ECO:0000269\|PubMed:15960615}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KU158415	0.0	KU158415.1 Triticum aestivum MOR-B gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020197851.1	1e-158	LOB domain-containing protein 29-like
Swissprot	Q5UG13	1e-106	LBD_ORYSJ; LOB domain-containing protein CRL1
TrEMBL	A0A3B6IVY2	0.0	A0A3B6IVY2_WHEAT; Uncharacterized protein
STRING	Traes_4BL_A4D0F4AD6.2	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2501	38	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58190.1	5e-61	lateral organ boundaries-domain 29

Publications ? help Back to Top
Coudert Y,Périn C,Courtois B,Khong NG,Gantet P Genetic control of root development in rice, the model cereal. Trends Plant Sci., 2010. 15(4): p. 219-26 [PMID:20153971] Kitomi Y, et al. The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling. Plant J., 2011. 67(3): p. 472-84 [PMID:21481033] Coudert Y, et al. Transcript profiling of crown rootless1 mutant stem base reveals new elements associated with crown root development in rice. BMC Genomics, 2011. 12: p. 387 [PMID:21806801] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]