PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4BL_A48C29364.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 291aa    MW: 31663.5 Da    PI: 9.8317
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4BL_A48C29364.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.57.6e-16103154155
                            CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            +rr+h ++Er+RR+++N+ ++ Lr+l+P++   ++++ + a+i+  A++Y+k+L+
  Traes_4BL_A48C29364.1 103 QRRTHIAVERNRRRQMNEYLAALRSLMPQS---YAQRGDQASIVGGAINYVKELE 154
                            79****************************...*******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.1E-15101158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.31E-16101158No hitNo description
PROSITE profilePS5088816.583102153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.28E-18102168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-13103154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.6E-12108159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MALEAVVFAQ GHFGYGQAPG LAPWCDMVGA GGFLEDWDQQ LLAAPVPPNA EDQWEPVSSW  60
DQSEASSEGK AAAPEPAMAA AATGRRKRRR TKIVKNKEEV ESQRRTHIAV ERNRRRQMNE  120
YLAALRSLMP QSYAQRGDQA SIVGGAINYV KELEQLLQSL EVQKSVKNRI GRSPFASSFT  180
FPQYSTSCNT TQATASDGGS GADSSGVKSE AGVADIEVTM VEGHASLKVL SRRRPKQLLR  240
LXACRRAAAA AHPAAPSQRD HRRRHGLVFL QPKGGGWLQA ELCGRYCGRC A
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18589RKRRR
28590RKRRRT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020153287.11e-149transcription factor bHLH96-like
SwissprotQ9C7T41e-49BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A3B6IU231e-176A0A3B6IU23_WHEAT; Uncharacterized protein
TrEMBLA0A446SF381e-176A0A446SF38_TRITD; Uncharacterized protein
STRINGTraes_4BL_A48C29364.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-38bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]