PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_4BL_A2B32FCEE.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

bHLH

Protein Properties

Length: 406aa MW: 43352.7 Da PI: 5.8089

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_4BL_A2B32FCEE.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.6	2.6e-14	203	249	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riNs +++Lr+llP+ +K +Ka+ L ++++++k+L Traes_4BL_A2B32FCEE.1 203 KSHSEAERRRRERINSHLARLRSLLPNT-----TKTDKASLLAEVIQHVKEL 249 79***********************9.....8**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	17.168	200	249	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.0E-11	203	249	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.94E-16	204	271	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.6E-15	204	270	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.6E-14	206	255	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.54E-5	213	252	No hit	No description
CDD	cd04873	5.86E-8	287	344	No hit	No description
Gene3D	G3DSA:3.30.70.260	8.3E-5	287	336	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence Send to blast
MGAHGDRRRH RREEVGVLLD EEEEELEHHA RACGGATSGL VDQELGGCQE GGGGMVFEAS 60 SSVGSVSATM GPPPIMCWPP PAPSLSPQEP LHGAIHHHHN IGIGGQGPFF PLLPPLPPQP 120 PPPPPFLADL YARRALQFAY DHSGGASSSS DPLGFGAGLY MGHHGSPVHG MMMAPPFGAS 180 PFSDFGRMTA QEIMDAKALA ASKSHSEAER RRRERINSHL ARLRSLLPNT TKTDKASLLA 240 EVIQHVKELK RQTSEIREEA CPLPTEADEL TVDASSDEDG RLLVRASLCC DDRPDLLPDL 300 IRALKALRLR ALKAEITTLG GRVKNVLVVT EDDSIACDGD QQDEDGNMQA PMSPQHAVAS 360 IQEALRAVME RTSSSSGAED SGGSASGGLK RQRTTSLSAI LENRSI

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence Send to blast

MGAHGDRRRH RREEVGVLLD EEEEELEHHA RACGGATSGL VDQELGGCQE GGGGMVFEAS  60
SSVGSVSATM GPPPIMCWPP PAPSLSPQEP LHGAIHHHHN IGIGGQGPFF PLLPPLPPQP  120
PPPPPFLADL YARRALQFAY DHSGGASSSS DPLGFGAGLY MGHHGSPVHG MMMAPPFGAS  180
PFSDFGRMTA QEIMDAKALA ASKSHSEAER RRRERINSHL ARLRSLLPNT TKTDKASLLA  240
EVIQHVKELK RQTSEIREEA CPLPTEADEL TVDASSDEDG RLLVRASLCC DDRPDLLPDL  300
IRALKALRLR ALKAEITTLG GRVKNVLVVT EDDSIACDGD QQDEDGNMQA PMSPQHAVAS  360
IQEALRAVME RTSSSSGAED SGGSASGGLK RQRTTSLSAI LENRSI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	208	213	ERRRRE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK377163	0.0	AK377163.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3150E20.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020189500.1	0.0	transcription factor bHLH30-like
Swissprot	Q9S7Y1	2e-73	BH030_ARATH; Transcription factor bHLH30
TrEMBL	A0A3B6IUF5	0.0	A0A3B6IUF5_WHEAT; Uncharacterized protein
TrEMBL	A0A446S8W6	0.0	A0A446S8W6_TRITD; Uncharacterized protein
STRING	Traes_4BL_A2B32FCEE.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1918	38	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	6e-44	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Ohashi-Ito K, et al. A bHLH complex activates vascular cell division via cytokinin action in root apical meristem. Curr. Biol., 2014. 24(17): p. 2053-8 [PMID:25131670] Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019]