PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_4BL_87A0339AD.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

Protein Properties

Length: 244aa MW: 27405.2 Da PI: 8.4588

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_4BL_87A0339AD.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	51.8	1.4e-16	143	233	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f k +++s+v + +l lp +f++++ k ++ t+tl de+ +++e k+ ++++ l++GW +F+ ++ +++gD+ vF+l++ + Traes_4BL_87A0339AD.2 143 FMKRMLHSHVVRGFWLGLPSHFCDTYLPK--NDCTITLVDEKDEEFESKY--LAYKKG--LSGGWAGFALDHVIRDGDSTVFQLIKPT 224 8999******************99533..4459***********..555555..9*********************9867 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 +f +v+++r+ Traes_4BL_87A0339AD.2 225 TF--KVHIIRA 233 77..9999885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	9.2E-19	134	233	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.73E-22	136	232	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	5.34E-25	141	232	No hit	No description
PROSITE profile	PS50863	11.321	143	234	IPR003340	B3 DNA binding domain
SMART	SM01019	3.7E-16	143	234	IPR003340	B3 DNA binding domain
Pfam	PF02362	5.7E-15	143	233	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MAIEKKGMSA YEAERERTVE ENKRKMEALN LRHLSAAVAT YAPKTPSPMK HKRRRIIEAA 60 TPVPSPPRRS RRLAHLPEVK YADACAEVGE DSERAGRWSP RRRSGSIYLA GGGGGPISMK 120 ARMEAASKAE ELESQLDPEF PSFMKRMLHS HVVRGFWLGL PSHFCDTYLP KNDCTITLVD 180 EKDEEFESKY LAYKKGLSGG WAGFALDHVI RDGDSTVFQL IKPTTFKVHI IRAAVGDDDN 240 EEME

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	51	55	KRRRI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK249804	0.0	AK249804.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf54k19, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020149937.1	1e-176	B3 domain-containing protein Os03g0184500-like
Swissprot	Q10QS9	1e-123	Y3845_ORYSJ; B3 domain-containing protein Os03g0184500
TrEMBL	A0A3B6IVH2	0.0	A0A3B6IVH2_WHEAT; Uncharacterized protein
STRING	Traes_4BL_87A0339AD.2	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1756	38	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	2e-47	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]