PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4BL_71E35BBC1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | ERF | ||||||||
Protein Properties | Length: 281aa MW: 30757.8 Da PI: 6.4198 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.5 | 1.1e-20 | 112 | 162 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+ta+eAa a++aa+ +l+ge Traes_4BL_71E35BBC1.1 112 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTADEAALAYDAAAFRLRGE 162 59******9.**********955...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.02E-21 | 111 | 171 | No hit | No description |
PROSITE profile | PS51032 | 23.538 | 112 | 169 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.3E-38 | 112 | 175 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.9E-32 | 112 | 170 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-23 | 112 | 170 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 5.9E-11 | 113 | 124 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.2E-15 | 113 | 162 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.9E-11 | 135 | 151 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
MATTVDWRSY RPDLPAAMYH MVDSRDQVMH AFAPATAQGA APTISFAFPC PGAEQSAGLL 60 RGASYLTPAQ ILQLQSQLHH VRRAPGAAMA AVGQPMKRHG VAALPARPAT KLYRGVRQRH 120 WGKWVAEIRL PRNRTRLWLG TFDTADEAAL AYDAAAFRLR GESARLNFPE LRRGGEHHGP 180 PLDAAIDAKL RSICHGEDMP QSQSDETPAP TTTLTPISFP DVKSEPVCSV SESSSSADGE 240 VSSCSDVVPE MQLLDFSEAP WDEFLLRKYP SLEIDWDAIL S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 8e-20 | 111 | 176 | 4 | 70 | ATERF1 |
3gcc_A | 8e-20 | 111 | 176 | 4 | 70 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ288171 | 0.0 | DQ288171.1 Triticum aestivum putative DRE binding factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020169042.1 | 1e-177 | ethylene-responsive transcription factor RAP2-4-like | ||||
TrEMBL | Q072C0 | 0.0 | Q072C0_WHEAT; Putative DRE binding factor | ||||
STRING | Traes_4BL_71E35BBC1.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP382 | 35 | 203 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78080.1 | 9e-47 | related to AP2 4 |
Publications ? help Back to Top | |||
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