PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4BL_61E35C455.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB_related | ||||||||
Protein Properties | Length: 158aa MW: 18824.8 Da PI: 12.6086 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.9 | 1.5e-10 | 3 | 28 | 21 | 47 |
TT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 21 ggtWktIartmgkgRtlkqcksrwqky 47 g++W++Iar+++ gRt++++k++w+++ Traes_4BL_61E35C455.1 3 GRRWSAIARCLP-GRTDNEIKNYWRTH 28 466*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00167 | 2.95E-8 | 1 | 29 | No hit | No description |
PROSITE profile | PS51294 | 14.386 | 1 | 33 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.01E-7 | 3 | 32 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.8E-12 | 3 | 29 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.4E-7 | 4 | 28 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 158 aa Download sequence Send to blast |
MDGRRWSAIA RCLPGRTDNE IKNYWRTHFK KARPSRRARA QLLHQYQLQQ QQQHRQYLHA 60 LHLLQQQQQQ MQMQLQENHH HQQQQQAMMM AQQSPPEEXX XXXXXXXXXX XXXXXXXPGG 120 VGGARPPAPG RRRGRAVGQP LAARRRRGRL QRRRLRRV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 130 | 146 | RRRGRAVGQPLAARRRR |
2 | 148 | 157 | RLQRRRLRRV |
3 | 150 | 156 | QRRRLRR |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC122149 | 3e-69 | AC122149.2 Oryza sativa Japonica Group chromosome 3 clone OSJNBa0083D24, complete sequence. | |||
GenBank | AC137697 | 3e-69 | AC137697.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0081A17, from chromosome 3, complete sequence. | |||
GenBank | AP014959 | 3e-69 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012611 | 3e-69 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A287PXF7 | 9e-25 | A0A287PXF7_HORVV; Uncharacterized protein | ||||
TrEMBL | A0A287PXG1 | 2e-25 | A0A287PXG1_HORVV; Uncharacterized protein | ||||
STRING | Traes_4BL_61E35C455.1 | 2e-88 | (Triticum aestivum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13480.1 | 9e-13 | myb domain protein 79 |
Publications ? help Back to Top | |||
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