PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4BL_5D316DD23.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | AP2 | ||||||||
Protein Properties | Length: 566aa MW: 61112.1 Da PI: 8.5742 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 46.2 | 1.1e-14 | 396 | 445 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Traes_4BL_5D316DD23.1 396 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 445 9***************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 8.00E-13 | 254 | 361 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 5.0E-14 | 255 | 277 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.3E-23 | 255 | 365 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.476 | 255 | 359 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.9E-4 | 319 | 351 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.24E-9 | 323 | 361 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 5.0E-14 | 323 | 360 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.31E-17 | 394 | 455 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 7.78E-23 | 394 | 455 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 4.6E-18 | 395 | 453 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.1E-33 | 395 | 459 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.111 | 395 | 453 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.5E-9 | 396 | 445 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 566 aa Download sequence Send to blast |
MDMNSGWLGF SLSSSSYAAR GYDAGEGVGC DGGDGGSCSS PTAVAASSSP IVGVPLHSGG 60 GSGQYDGRDW RHQHAEAKGP KLEDFLSVGY GNDRSSGIYD ASHADELKYH HHQDVHHAYP 120 GSPYFQGNGG GGAVIGLDIN NAPPPPHCTG LPDHHYMPAH HGQYSLCPPN QQAAGTGAMA 180 AAPMYSSAAG FDGSTNMSIS GIKSWLRQSM YVPERSPAVP PSVHSAPTEP PPPLPAPCVP 240 VPRKLAQTFG QRTSQFRGVT RHRWTGRYEA HLWDNTCRKE GQTRKGRQGE LLLIRSRTTK 300 HFCLCNFVLT STSMHVRSRI CRMQRAVYLG GYDKEEKAAR AYDLAALKYW GPTTHINFPL 360 STYEKELEEM KHMTRQEFIA HLRRNSSGFS RGASMYRGVT RHHQHGRWQA RIGRVAGNKD 420 LYLGTFSTQE EAAEAYDIAA IKFRGLSAVT NFDISKYDVK RICASSHLIG GDLACRRSPT 480 RDAPALPSGV SVAVERPEAG ASDNSSDASD GHRGAHLLHG LQYAHAMKYE AGEGSNGGGN 540 WMPGAARPVA GVPAAHPLPV FALWND |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT055767 | 1e-156 | BT055767.2 Zea mays full-length cDNA clone ZM_BFb0180B22 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020186422.1 | 0.0 | AP2-like ethylene-responsive transcription factor AIL1 isoform X1 | ||||
TrEMBL | A0A3B6IV99 | 0.0 | A0A3B6IV99_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446SE82 | 0.0 | A0A446SE82_TRITD; Uncharacterized protein | ||||
STRING | Traes_4BL_5D316DD23.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP797 | 38 | 151 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72570.1 | 1e-108 | AP2 family protein |
Publications ? help Back to Top | |||
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