PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Traes_4BL_58F4541EF.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 96aa MW: 10750.1 Da PI: 8.1288 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 36 | 1.2e-11 | 26 | 50 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +ktelC+ + G C+yG+rC+FaHg Traes_4BL_58F4541EF.1 26 QKTELCNKWEG-GACSYGGRCRFAHG 50 69*******98.*************9 PP | |||||||
2 | zf-CCCH | 21.6 | 3.8e-07 | 63 | 89 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ykt +C+ fa+ C+yG rC+F H+p Traes_4BL_58F4541EF.1 63 YKTLPCQMFAAASGCPYGHRCHFRHSP 89 9************************86 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-13 | 22 | 57 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.976 | 25 | 52 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.5E-7 | 25 | 51 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.04E-8 | 26 | 55 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.4E-9 | 26 | 50 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.1E-11 | 58 | 89 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.35E-8 | 59 | 88 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.831 | 62 | 90 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.5E-4 | 62 | 89 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.6E-4 | 63 | 89 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 96 aa Download sequence Send to blast |
IYQAGEDEAK GDGEVVELEA YRQGTQKTEL CNKWEGGACS YGGRCRFAHG LQEMRPVIRH 60 PRYKTLPCQM FAAASGCPYG HRCHFRHSPA PTAQSY |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1m9o_A | 8e-19 | 27 | 90 | 11 | 75 | Tristetraproline |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC118668 | 8e-81 | AC118668.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0036G02, from chromosome 3, complete sequence. | |||
GenBank | AC137267 | 8e-81 | AC137267.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0032G21, from chromosome 3, complete sequence. | |||
GenBank | AP014959 | 8e-81 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012611 | 8e-81 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020199363.1 | 6e-65 | putative zinc finger CCCH domain-containing protein 21 | ||||
Swissprot | Q10MN8 | 2e-46 | C3H21_ORYSJ; Putative zinc finger CCCH domain-containing protein 21 | ||||
TrEMBL | A0A3B6JKU6 | 1e-63 | A0A3B6JKU6_WHEAT; Uncharacterized protein | ||||
STRING | Traes_4BL_58F4541EF.1 | 1e-66 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12143 | 32 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G66810.1 | 1e-38 | C3H family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|