PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4BL_57E9A2C6B.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | bHLH | ||||||||
Protein Properties | Length: 211aa MW: 22689.6 Da PI: 6.8735 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 25.4 | 2.5e-08 | 177 | 199 | 7 | 29 |
HHHHHHHHHHHHHHHHHHCTSCC CS HLH 7 erErrRRdriNsafeeLrellPk 29 ++ErrRR+r+N++++ Lr+++Pk Traes_4BL_57E9A2C6B.2 177 MAERRRRKRLNDRLSMLRSIVPK 199 89********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 9.902 | 170 | 211 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.23E-7 | 172 | 202 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.9E-6 | 176 | 199 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.1E-6 | 177 | 200 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MGGMDQLDEQ SFLDELMSLR REEAPWLAYT GSGMMTTSDL LFYGGEGAGE ASSGTDLAGP 60 FLQQPMAPPH RSHEEFNFDY LSEVCNPYRS CVGVVPRHGV AHGAGQALVQ YPLHDAMAED 120 DPSGSNLHRG GGSSSSPVPF VFGAGGAGES PEMIRGVFTG AHARSKLNGG TTSKNLMAER 180 RRRKRLNDRL SMLRSIVPKI SKVCLCLASR N |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 178 | 185 | ERRRRKRL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020150227.1 | 1e-115 | transcription factor bHLH61-like isoform X1 | ||||
Refseq | XP_020150229.1 | 1e-115 | transcription factor bHLH61-like isoform X2 | ||||
TrEMBL | A0A446SGZ9 | 1e-151 | A0A446SGZ9_TRITD; Uncharacterized protein | ||||
STRING | Traes_4BL_57E9A2C6B.2 | 1e-155 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1302 | 37 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65640.2 | 1e-08 | beta HLH protein 93 |
Publications ? help Back to Top | |||
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