PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4BL_54689C3C1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | bHLH | ||||||||
Protein Properties | Length: 292aa MW: 32602 Da PI: 7.8274 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 16.5 | 1.5e-05 | 35 | 82 | 5 | 51 |
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYI 51 ++e E+ RR+r++ e+L +l+P + + ++ L YI Traes_4BL_54689C3C1.1 35 KKESEKERRKRMKALCEKLASLIPReHCCSSTDTMTQLGSLDVGASYI 82 6899********************955433333355555555555555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 8.55 | 30 | 85 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.7E-10 | 35 | 100 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.55E-8 | 36 | 99 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 292 aa Download sequence Send to blast |
MNAYALHSME VKAKPARGGK RSRASGGMAV VLLEKKESEK ERRKRMKALC EKLASLIPRE 60 HCCSSTDTMT QLGSLDVGAS YIKKLKERVD ELQRRRNSVQ ALDTLRGDTS IPTPTTTTTT 120 SSSARSPEEE KAWEALEPVL QVRQHDDSSM EVRLICCMER PIKLHEVITI HEEEGAEIIN 180 ANRSVAGHKM LYTIHSRAFS SRIGIDVSRV SERLGALLRL FSHENQAPSC MRSDRVLRYT 240 DGANATPPKE LVSNNDIGGT NKVTNHECES WVEQDQVTWS SMLASVSPEL LE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK248746 | 0.0 | AK248746.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf7p01, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020177071.1 | 1e-178 | uncharacterized protein LOC109762608 | ||||
TrEMBL | A0A446SJA9 | 0.0 | A0A446SJA9_TRITD; Uncharacterized protein | ||||
STRING | Traes_4BL_54689C3C1.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP829 | 36 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10585.1 | 2e-12 | bHLH family protein |
Publications ? help Back to Top | |||
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