PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_4BL_54689C3C1.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

bHLH

Protein Properties

Length: 292aa MW: 32602 Da PI: 7.8274

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_4BL_54689C3C1.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.5	1.5e-05	35	82	5	51
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYI 51 ++e E+ RR+r++ e+L +l+P + + ++ L YI Traes_4BL_54689C3C1.1 35 KKESEKERRKRMKALCEKLASLIPReHCCSSTDTMTQLGSLDVGASYI 82 6899********************955433333355555555555555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	8.55	30	85	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.7E-10	35	100	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.55E-8	36	99	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MNAYALHSME VKAKPARGGK RSRASGGMAV VLLEKKESEK ERRKRMKALC EKLASLIPRE 60 HCCSSTDTMT QLGSLDVGAS YIKKLKERVD ELQRRRNSVQ ALDTLRGDTS IPTPTTTTTT 120 SSSARSPEEE KAWEALEPVL QVRQHDDSSM EVRLICCMER PIKLHEVITI HEEEGAEIIN 180 ANRSVAGHKM LYTIHSRAFS SRIGIDVSRV SERLGALLRL FSHENQAPSC MRSDRVLRYT 240 DGANATPPKE LVSNNDIGGT NKVTNHECES WVEQDQVTWS SMLASVSPEL LE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK248746	0.0	AK248746.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf7p01, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020177071.1	1e-178	uncharacterized protein LOC109762608
TrEMBL	A0A446SJA9	0.0	A0A446SJA9_TRITD; Uncharacterized protein
STRING	Traes_4BL_54689C3C1.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP829	36	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10585.1	2e-12	bHLH family protein

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]