PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4BL_3FB579782.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family LBD
Protein Properties Length: 293aa    MW: 30389.9 Da    PI: 9.1214
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4BL_3FB579782.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260127.27.5e-40381381100
                 DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 
                            +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r da+ +++yeA+ar+rdPvyG+v++i+ lqqq+
  Traes_4BL_3FB579782.1  38 PCGACKFLRRKCVSECIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLQIPAHKRLDAVVTICYEAQARLRDPVYGCVAHIFVLQQQV 125
                            7***********************9989************************************************************ PP

                 DUF260  88 eqlkaelallkee 100
                             +l+ael +l+++
  Traes_4BL_3FB579782.1 126 VNLQAELTYLQTH 138
                            *******999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.95137139IPR004883Lateral organ boundaries, LOB
PfamPF031954.9E-3938136IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MSSGGGSSTL GGCGGPSGSG SGSGGVGGGG LGGGGGGPCG ACKFLRRKCV SECIFAPYFD  60
SEQGAAHFAA VHKVFGASNV SKLLLQIPAH KRLDAVVTIC YEAQARLRDP VYGCVAHIFV  120
LQQQVVNLQA ELTYLQTHLA TLELPSPPLP AAPQMPMAMP AQFSISDLPS TTNIPTTIDL  180
SALFEPPAQP QWAVQQHHQH QLRQHPSYGA MAHRGGSSMA EGSAASGSGX XXXXXGTGAP  240
GPPRPVRREA RAAATTAAAS KMISILPPSR ARGPWPESDQ GATVQRDRVR DRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A9e-38341397111LOB family transfactor Ramosa2.1
5ly0_B9e-38341397111LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes. {ECO:0000269|PubMed:19088331}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0940770.0FP094077.1 Phyllostachys edulis cDNA clone: bphylf043i04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020160420.11e-109LOB domain-containing protein 30
SwissprotO813232e-66LBD30_ARATH; LOB domain-containing protein 30
TrEMBLA0A3B6IUN81e-163A0A3B6IUN8_WHEAT; Uncharacterized protein
STRINGTraes_4BL_3FB579782.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33463782
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00220.11e-62LBD family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  2. Rast-Somssich MI, et al.
    The Arabidopsis JAGGED LATERAL ORGANS (JLO) gene sensitizes plants to auxin.
    J. Exp. Bot., 2017. 68(11): p. 2741-2755
    [PMID:28472464]
  3. Liu C,Yu H,Li L
    SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana.
    PLoS Genet., 2019. 15(1): p. e1007928
    [PMID:30657769]