PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_4BL_37108D17C.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

bHLH

Protein Properties

Length: 66aa MW: 7731.09 Da PI: 8.5099

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_4BL_37108D17C.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.6	2.6e-09	2	41	13	55
HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHH..HHHHHHH CS HLH 13 RdriNsafeeLrellPkaskapskKlsKaeiLekAv..eYIksLq 55 R+riN+++ L++l+P++ K +Ka++L +A+ eY+k+Lq Traes_4BL_37108D17C.1 2 RSRINEKMKALQSLIPNS-----NKTDKASMLDEAIliEYLKQLQ 41 99*************7.....5*******555****9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.017	1	38	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.88E-9	2	45	No hit	No description
SMART	SM00353	0.0049	2	46	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-12	2	46	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.01E-11	2	49	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-6	2	41	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010047	Biological Process	fruit dehiscence
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 66 aa Download sequence Send to blast
WRSRINEKMK ALQSLIPNSN KTDKASMLDE AILIEYLKQL QLQVQVSKCM SQWLVDVETN 60 LLVHLF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that plays a role in floral organogenesis. Promotes the growth of carpel margins and of pollen tract tissues derived from them. {ECO:0000269\|PubMed:10225997, ECO:0000269\|Ref.8}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by the A class gene AP2 in the first whorl and by ARF3/ETT in gynoecium. {ECO:0000269\|PubMed:11245574}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK374787	3e-33	AK374787.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3076F24.
GenBank	BT035360	3e-33	BT035360.1 Zea mays full-length cDNA clone ZM_BFb0057H06 mRNA, complete cds.
GenBank	KJ726860	3e-33	KJ726860.1 Zea mays clone pUT3401 bHLH transcription factor (bHLH125) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003561052.2	8e-19	transcription factor SPATULA
Refseq	XP_010531246.1	8e-19	PREDICTED: transcription factor SPATULA-like
Refseq	XP_013583356.1	9e-19	PREDICTED: transcription factor SPATULA isoform X1
Refseq	XP_013583361.1	9e-19	PREDICTED: transcription factor SPATULA isoform X2
Refseq	XP_013628222.1	1e-18	PREDICTED: transcription factor SPATULA-like isoform X1
Refseq	XP_013628223.1	9e-19	PREDICTED: transcription factor SPATULA-like isoform X2
Refseq	XP_013686105.1	1e-18	transcription factor SPATULA-like isoform X1
Refseq	XP_013686106.1	9e-19	transcription factor SPATULA-like isoform X2
Refseq	XP_014752502.1	8e-19	transcription factor SPATULA
Refseq	XP_018449018.1	9e-19	PREDICTED: transcription factor SPATULA-like
Refseq	XP_018449689.1	9e-19	PREDICTED: transcription factor SPATULA-like
Refseq	XP_018468780.1	9e-19	PREDICTED: transcription factor SPATULA
Refseq	XP_018512478.1	9e-19	PREDICTED: transcription factor SPATULA
Refseq	XP_022550134.1	9e-19	transcription factor SPATULA-like isoform X1
Refseq	XP_022550135.1	9e-19	transcription factor SPATULA-like isoform X2
Refseq	XP_022574116.1	9e-19	transcription factor SPATULA isoform X1
Refseq	XP_022574130.1	9e-19	transcription factor SPATULA isoform X2
Refseq	XP_022574141.1	9e-19	transcription factor SPATULA isoform X3
Refseq	XP_022575350.1	1e-18	transcription factor SPATULA-like isoform X1
Refseq	XP_022575351.1	9e-19	transcription factor SPATULA-like isoform X2
Swissprot	Q9FUA4	1e-19	SPT_ARATH; Transcription factor SPATULA
TrEMBL	A0A2I0XCG0	3e-20	A0A2I0XCG0_9ASPA; Transcription factor PIF3
TrEMBL	M0TZD9	3e-20	M0TZD9_MUSAM; Uncharacterized protein
STRING	Traes_4BL_37108D17C.1	2e-40	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3336	37	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36930.1	7e-17	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Pabón-Mora N,Wong GK,Ambrose BA Evolution of fruit development genes in flowering plants. Front Plant Sci, 2014. 5: p. 300 [PMID:25018763] Moubayidin L,Ostergaard L Dynamic control of auxin distribution imposes a bilateral-to-radial symmetry switch during gynoecium development. Curr. Biol., 2014. 24(22): p. 2743-8 [PMID:25455035] Pfannebecker KC,Lange M,Rupp O,Becker A Seed Plant-Specific Gene Lineages Involved in Carpel Development. Mol. Biol. Evol., 2017. 34(4): p. 925-942 [PMID:28087776] Zumajo-Cardona C,Ambrose BA,Pabón-Mora N Evolution of the SPATULA/ALCATRAZ gene lineage and expression analyses in the basal eudicot, Bocconia frutescens L. (Papaveraceae). Evodevo, 2017. 8: p. 5 [PMID:28331573] Reyes-Olalde JI, et al. The bHLH transcription factor SPATULA enables cytokinin signaling, and both activate auxin biosynthesis and transport genes at the medial domain of the gynoecium. PLoS Genet., 2017. 13(4): p. e1006726 [PMID:28388635] Wu M, et al. SPATULA regulates floral transition and photomorphogenesis in a PHYTOCHROME B-dependent manner in Arabidopsis. Biochem. Biophys. Res. Commun., 2018. 503(4): p. 2380-2385 [PMID:29966653]