PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4BL_340D5E00A.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | GRAS | ||||||||
Protein Properties | Length: 224aa MW: 24503.7 Da PI: 6.103 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 88 | 1.6e-27 | 69 | 207 | 137 | 276 |
GRAS 137 egppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles 222 +gpp++RiT v+ p++g ++ + e+g+rL++ A+++ vp++f+++ +++ ++++L+v+p+E+l+Vn +++ +l+desv ++s Traes_4BL_340D5E00A.1 69 GGPPEVRITNVDLPQPGfrPENHMAEMGHRLSSCARQFCVPLKFRAV----VAEWHIDDLNVEPDEVLVVNDMFNFRTLMDESVLTDS 152 79**************9*9***************************7....55677889************************98888 PP GRAS 223 ..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklp 276 +rd vL+ + +++P+v++ + ++ ++ Fl rf eal y+salfd+++a ++ Traes_4BL_340D5E00A.1 153 psPRDVVLSNISKMKPEVFIQGIVNGSY-GTFFLSRFREALFYHSALFDMFDAMAA 207 779************************9.789*******************98765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 16.03 | 1 | 224 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.5E-25 | 69 | 207 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
NAPRWWSSSR PTSSSCPPAA SGRWPSPSPT RPSLTLRRGG ASCTSWITAS IPDSSGRSCC 60 ACWQPGTYGG PPEVRITNVD LPQPGFRPEN HMAEMGHRLS SCARQFCVPL KFRAVVAEWH 120 IDDLNVEPDE VLVVNDMFNF RTLMDESVLT DSPSPRDVVL SNISKMKPEV FIQGIVNGSY 180 GTFFLSRFRE ALFYHSALFD MFDAMAAAGV EGTDPLSTLN VGVG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024319189.1 | 2e-64 | scarecrow-like protein 9 | ||||
TrEMBL | A0A3L6PJW3 | 3e-73 | A0A3L6PJW3_PANMI; Scarecrow-like protein 14 | ||||
STRING | Traes_4BL_340D5E00A.1 | 1e-165 | (Triticum aestivum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 8e-35 | SCARECROW-like 14 |
Publications ? help Back to Top | |||
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