PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4BL_32D8155C6.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family G2-like
Protein Properties Length: 354aa    MW: 39747.8 Da    PI: 7.5807
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4BL_32D8155C6.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like109.22.1e-3447101155
                G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                            kprl+WtpeLH+rFveav+qLGG++kAtPkti++lm+v+gLtl+h+kSHLQkYRl
  Traes_4BL_32D8155C6.1  47 KPRLKWTPELHDRFVEAVNQLGGPDKATPKTIMRLMGVPGLTLYHLKSHLQKYRL 101
                            79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.83144104IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.0E-3345102IPR009057Homeodomain-like
SuperFamilySSF466894.12E-1846102IPR009057Homeodomain-like
TIGRFAMsTIGR015578.4E-2547102IPR006447Myb domain, plants
PfamPF002491.7E-1049100IPR001005SANT/Myb domain
PfamPF143797.1E-26147194IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MYHHQQQLQS HNQLLASRQT FPSERHLLLQ GGIIPGESGL ILSTDAKPRL KWTPELHDRF  60
VEAVNQLGGP DKATPKTIMR LMGVPGLTLY HLKSHLQKYR LSKNLHVQAN VGNSRTAVGC  120
TIATEKQSEG NGSPVGHHLN TQTNKSMHIG EALQMQIEVQ RRLHEQLEVQ RHLQLRIEAQ  180
GKYLQSMLEK AHETLAKQNT GSGGLETAKM QLSELVSKVS TECFHNAFTS FEEIEGSQML  240
RRHTMQLGDG SVDSCLTACE GSQKDQDILS MSLSAQKGKE IGGMAFDLQM QERGHEDLFL  300
NKLSRRPPNH HEGHERRDSL SMTYQATKLD LNMNDTNNGT QNSEKFDLNG FSWS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-2046103158Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-2046103158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A5e-2047103157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-2047103157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-2047103157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-2047103157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-2046103158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-2046103158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-2046103158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-2046103158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-2046103158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-2046103158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00331DAPTransfer from AT3G04030Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3669670.0AK366967.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2049C10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020190332.10.0myb-related protein 2-like
SwissprotQ9SQQ91e-103PHL9_ARATH; Myb-related protein 2
TrEMBLA0A3B6ISV50.0A0A3B6ISV5_WHEAT; Uncharacterized protein
STRINGTraes_4BL_32D8155C6.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35743879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04030.31e-103G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K
    NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis.
    Plant Sci., 2017. 263: p. 219-225
    [PMID:28818378]