PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4BL_2136196AE.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 773aa    MW: 86453.4 Da    PI: 5.192
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4BL_2136196AE.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM54.15.2e-17731991128
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknrat 78 
                            lp+G +F+P+d++l+  +L++++ +        +  +e+ik  d       ++P+d+p  ++++ + +yfF+k+ + +++++   +  
  Traes_4BL_2136196AE.2  73 LPRGAQFNPSDSDLL-WHLAAEMGNGLahrhpfI--SEFIKYGDegarFGCTHPRDMP-GMRQDGHALYFFHKKVNLHNNEND--K-- 152
                            699************.667777666553454432..2233322233338899******.667788999*****9987755333..3.. PP

                    NAM  79 ksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                             +  W+++g +++++  +g l g+k+++++y + ++++++tdW +h+y++
  Traes_4BL_2136196AE.2 153 -DISWQKSGPSRSIIL-DGGLQGCKEIFALY-AFKNSPQRTDWELHQYHI 199
                            .335************.999***********.5677779*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-2166217IPR003441NAC domain
PROSITE profilePS5100521.54173217IPR003441NAC domain
PfamPF023652.6E-774199IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 773 aa     Download sequence    Send to blast
MAFDIDSLPP LLGPDPDSYS DSDHLPPAPR RGRPLRPPPA PRVEPSPQAP GRCEATPAPE  60
GIGGAAQQSW PGLPRGAQFN PSDSDLLWHL AAEMGNGLAH RHPFISEFIK YGDEGARFGC  120
THPRDMPGMR QDGHALYFFH KKVNLHNNEN DKDISWQKSG PSRSIILDGG LQGCKEIFAL  180
YAFKNSPQRT DWELHQYHIK NTMENEGELV LSKIFHKSQK CHCECASKAP VQSAQDNSVT  240
DDDSKEKEGA QLEKLSVNMA TESNFVEGNG NNREQMLVEM YPDQDKPCSL KHVLDTADVN  300
HENQINDQAE TELDHMSLQE RYRILLADMR SCSARVSAEK CALNDMGNSS MQMDAETSGP  360
VPKSESEEIN HGGTTYRECS VNGKEIPVED TEGPVNDKAF NSSAELLLSQ TPACGDENVQ  420
LAPRNSGTYL VDVKTEPALD GCAIYPSESP SVKFHHSNNN GLKVSGSLLE CVPKDAEDSL  480
PSLGVKSELS GYELPGLCEN SFISSMEPIV KKPHTRTLNC NGGLAPCSRQ RNKRDSSEKV  540
LEEDGYKNDE GIPYPSRQKR KKKTATDSIE TALEEDAPGL LQILLDKGIV VKEIKLYDVV  600
EDDEMLPDCT ESDFQDLENV ITKLFPQRTS LLKSVAKHGK GGKAIYCLAC LISLIEQSRY  660
LQFRDCPVEW GWCRDLQSFI FVFKSHNRLV LERPEYGYAT YFFEILQSVP IEWQIRRMVT  720
AMKLSSCGRT ALIENRPLLV SFFAPCFFHR LVQQNWWLTV CVQMLMYIFN LSK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1528533RQRNKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3724600.0AK372460.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3002I07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020153315.10.0uncharacterized protein LOC109738630 isoform X2
TrEMBLA0A3B6IW150.0A0A3B6IW15_WHEAT; Uncharacterized protein
TrEMBLA0A446SAW60.0A0A446SAW6_TRITD; Uncharacterized protein
STRINGTraes_4BL_2136196AE.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74793239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.11e-34NAC family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]