PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4BL_19F19CCC0.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 246aa    MW: 26516 Da    PI: 8.4833
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4BL_19F19CCC0.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.52.8e-1460106455
                            HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             h ++Er+RR++iN++f eL  ++P +     kK++K +iL  A++Y+k+Lq
  Traes_4BL_19F19CCC0.1  60 DHIMAERKRREKINQRFIELSAVIPGL-----KKMDKGTILADATRYVKELQ 106
                            699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.24356105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-1860114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.5E-1260106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.5E-1760115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.46E-1561110No hitNo description
SMARTSM003539.7E-1462111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MSSTGTSNAL SMSWDFGAAL PPQPVSSGGG GTLAAGAPLR SGVSQPTRRA STKSTPYAQD  60
HIMAERKRRE KINQRFIELS AVIPGLKKMD KGTILADATR YVKELQERVK YLEAAGGNHR  120
SVETVVLVWK PRCLVAPDGE ACPGFFSAAG TPANGSQLPE IEAKLSEDNV MVRIHCEING  180
KGLVARVLAE VEZLHLRIVH NBVMPFTXST VIITTMAKVE EGFTVNTEEI VGRLNSALYQ  240
HSSGNK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16469ERKRRE
26570RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020181335.11e-163transcription factor NAI1-like
TrEMBLA0A3B6IY861e-179A0A3B6IY86_WHEAT; Uncharacterized protein
TrEMBLA0A446SFD20.0A0A446SFD2_TRITD; Uncharacterized protein
STRINGTraes_4BL_19F19CCC0.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92731143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-44bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]