PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4BL_0F2281616.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 96aa    MW: 10491.8 Da    PI: 11.1599
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4BL_0F2281616.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.65.1e-096195645
                           HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHH CS
                    HLH  6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLe 45
                            ++ErrRR+r+N++++ Lr+++Pk +      K++  +iLe
  Traes_4BL_0F2281616.2 61 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILE 95
                           589*********************66......777777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.28E-94795IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.5445596IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-66095IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.1E-96295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 96 aa     Download sequence    Send to blast
MAEDHPSCGN LHRGGGSSSS PVPFVFGEGG AGETSEEMTR GVFSGGNPRS KLNRGTTSKN  60
LMAERRRRKR LNDRLSMLRS IVPKISKMDR TSILED
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16370ERRRRKRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3674521e-76AK367452.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2057G19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020150249.12e-42transcription factor bHLH93-like
TrEMBLA0A3B6U4T16e-60A0A3B6U4T1_WHEAT; Uncharacterized protein
STRINGTraes_4BL_0F2281616.25e-63(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2788633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.25e-15beta HLH protein 93
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]