PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4BL_0F02B2343.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family TALE
Protein Properties Length: 611aa    MW: 65406.6 Da    PI: 6.5539
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4BL_0F02B2343.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.23.1e-093593961954
                            HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
               Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                            Fe   n+yps  ++  LA+++gL+ +qV++WF N R +
  Traes_4BL_0F02B2343.1 359 FEHflNPYPSDVDKHILARQTGLSRSQVSNWFINARVR 396
                            665559******************************88 PP

2BELL80.12.9e-26221289472
                   BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                            el++ k +L  +leeVd+rY++y+eq++ +++ Feavag  +a  Yt++A ++iSrhFr+L+d i+ q+
  Traes_4BL_0F02B2343.1 221 ELKRLKDRLYVMLEEVDRRYRRYCEQMRGLAGGFEAVAGERAASGYTAVAARTISRHFRSLRDGIVAQL 289
                            7788899***********************************************************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005745.3E-35153287IPR006563POX domain
PfamPF075264.1E-36159285IPR006563POX domain
PROSITE profilePS5007112.341337400IPR001356Homeobox domain
SMARTSM003895.9E-9340404IPR001356Homeobox domain
CDDcd000861.67E-12340401No hitNo description
SuperFamilySSF466891.03E-17341407IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-27343406IPR009057Homeodomain-like
PfamPF059207.3E-18357396IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0009506Cellular Componentplasmodesma
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 611 aa     Download sequence    Send to blast
MAHDPSLGFA DYFSAADAAA ASLMPQMDEG APELYGLQSG MELLGMRGLH AAAMSGATSV  60
SADVHCDGGG DGHDASTMRF FLEQQQQQHH QHHQPSQQAP LSLSLCRPEE VAQLHQQQHH  120
HHLGGSSQQQ HEASAASWML PHEHEAATYA HGHGAAWPLR SSRFLLPAQQ LLQGYCSLPV  180
DITPKRAKPP QQDEAGGGEA SSSSTSGWTP SAQIQAMEAL ELKRLKDRLY VMLEEVDRRY  240
RRYCEQMRGL AGGFEAVAGE RAASGYTAVA ARTISRHFRS LRDGIVAQLQ AVRKALGEKD  300
VAPPGMTRGD TPRLKVLDQC IRQQKAMHQN GGMMMDSHPW RPQRGLPERA VTILRAWLFE  360
HFLNPYPSDV DKHILARQTG LSRSQVSNWF INARVRLWKP MVEEMYVEEM KGEQQDDGGL  420
INPNNPSSSG SHASDAQGQQ GAAAADEGER VGGADDRKPT RAQLHVGHDA GSLASVVNIA  480
GVSARMEGFG VMDAGHHLDF DAYGGQGQGG FGGGAGGVSL TLGLQQHDTH GGGGGVNIAF  540
GAPSSAQHGA GGFLFPGEQM DGVGLHPSGG HGQNIQFGMD GAPEASSHGV QDQQHYRGMS  600
AGFHLLRDLA G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A6e-16346403158Homeobox protein Meis1
4xrs_B6e-16346403158Homeobox protein Meis1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3678000.0AK367800.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2062I16.
GenBankAK3721850.0AK372185.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2147N13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020184600.10.0homeobox protein BEL1 homolog
RefseqXP_020184605.10.0homeobox protein BEL1 homolog
RefseqXP_020184610.10.0homeobox protein BEL1 homolog
RefseqXP_020184619.10.0homeobox protein BEL1 homolog
TrEMBLA0A3B6IYR60.0A0A3B6IYR6_WHEAT; Uncharacterized protein
STRINGTraes_4BL_0F02B2343.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38143764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41410.12e-85TALE family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]