PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4BL_0F02B2343.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | TALE | ||||||||
Protein Properties | Length: 611aa MW: 65406.6 Da PI: 6.5539 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.2 | 3.1e-09 | 359 | 396 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe n+yps ++ LA+++gL+ +qV++WF N R + Traes_4BL_0F02B2343.1 359 FEHflNPYPSDVDKHILARQTGLSRSQVSNWFINARVR 396 665559******************************88 PP | |||||||
2 | BELL | 80.1 | 2.9e-26 | 221 | 289 | 4 | 72 |
BELL 4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 el++ k +L +leeVd+rY++y+eq++ +++ Feavag +a Yt++A ++iSrhFr+L+d i+ q+ Traes_4BL_0F02B2343.1 221 ELKRLKDRLYVMLEEVDRRYRRYCEQMRGLAGGFEAVAGERAASGYTAVAARTISRHFRSLRDGIVAQL 289 7788899***********************************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 5.3E-35 | 153 | 287 | IPR006563 | POX domain |
Pfam | PF07526 | 4.1E-36 | 159 | 285 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.341 | 337 | 400 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.9E-9 | 340 | 404 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.67E-12 | 340 | 401 | No hit | No description |
SuperFamily | SSF46689 | 1.03E-17 | 341 | 407 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.7E-27 | 343 | 406 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 7.3E-18 | 357 | 396 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0009506 | Cellular Component | plasmodesma | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 611 aa Download sequence Send to blast |
MAHDPSLGFA DYFSAADAAA ASLMPQMDEG APELYGLQSG MELLGMRGLH AAAMSGATSV 60 SADVHCDGGG DGHDASTMRF FLEQQQQQHH QHHQPSQQAP LSLSLCRPEE VAQLHQQQHH 120 HHLGGSSQQQ HEASAASWML PHEHEAATYA HGHGAAWPLR SSRFLLPAQQ LLQGYCSLPV 180 DITPKRAKPP QQDEAGGGEA SSSSTSGWTP SAQIQAMEAL ELKRLKDRLY VMLEEVDRRY 240 RRYCEQMRGL AGGFEAVAGE RAASGYTAVA ARTISRHFRS LRDGIVAQLQ AVRKALGEKD 300 VAPPGMTRGD TPRLKVLDQC IRQQKAMHQN GGMMMDSHPW RPQRGLPERA VTILRAWLFE 360 HFLNPYPSDV DKHILARQTG LSRSQVSNWF INARVRLWKP MVEEMYVEEM KGEQQDDGGL 420 INPNNPSSSG SHASDAQGQQ GAAAADEGER VGGADDRKPT RAQLHVGHDA GSLASVVNIA 480 GVSARMEGFG VMDAGHHLDF DAYGGQGQGG FGGGAGGVSL TLGLQQHDTH GGGGGVNIAF 540 GAPSSAQHGA GGFLFPGEQM DGVGLHPSGG HGQNIQFGMD GAPEASSHGV QDQQHYRGMS 600 AGFHLLRDLA G |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrs_A | 6e-16 | 346 | 403 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 6e-16 | 346 | 403 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK367800 | 0.0 | AK367800.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2062I16. | |||
GenBank | AK372185 | 0.0 | AK372185.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2147N13. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020184600.1 | 0.0 | homeobox protein BEL1 homolog | ||||
Refseq | XP_020184605.1 | 0.0 | homeobox protein BEL1 homolog | ||||
Refseq | XP_020184610.1 | 0.0 | homeobox protein BEL1 homolog | ||||
Refseq | XP_020184619.1 | 0.0 | homeobox protein BEL1 homolog | ||||
TrEMBL | A0A3B6IYR6 | 0.0 | A0A3B6IYR6_WHEAT; Uncharacterized protein | ||||
STRING | Traes_4BL_0F02B2343.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3814 | 37 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41410.1 | 2e-85 | TALE family protein |
Publications ? help Back to Top | |||
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