PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AS_FF900272B.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 85aa    MW: 9603.87 Da    PI: 7.3657
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AS_FF900272B.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.51e-0712521554
                           HHHHHHHHHHCTSCCC....TTS-STCHHHHHHHHHHHHHH CS
                    HLH 15 riNsafeeLrellPkas.kapskKlsKaeiLekAveYIksL 54
                           +iN+ +++L+ l+P++s + ++ + s +  L++++ YIksL
  Traes_4AS_FF900272B.1 12 EINELISKLQALVPESSrRRSASRSSASKLLKETCGYIKSL 52
                           7**************6647777779999************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.858152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-91176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-91270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-51252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 85 aa     Download sequence    Send to blast
MSSRRGRITD EEINELISKL QALVPESSRR RSASRSSASK LLKETCGYIK SLHQEVEDLS  60
DRLSELMSTL DETSPQAEII RGLLR
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. {ECO:0000250}.
UniProtAtypical and probable non DNA-binding bHLH transcription that integrates multiple signaling pathways to regulate cell elongation and plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3601311e-104AK360131.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1111B06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020187115.14e-40transcription factor ILI3
SwissprotA2XD154e-33ILI3_ORYSI; Transcription factor ILI3
SwissprotQ10R474e-33ILI3_ORYSJ; Transcription factor ILI3
TrEMBLA0A3B6HP962e-51A0A3B6HP96_WHEAT; Uncharacterized protein
TrEMBLA0A446QKM32e-51A0A446QKM3_TRITD; Uncharacterized protein
STRINGTraes_4AS_FF900272B.13e-52(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92838145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.14e-23bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]