PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AS_F04DD4409.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HD-ZIP
Protein Properties Length: 278aa    MW: 30384.9 Da    PI: 7.2679
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AS_F04DD4409.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.93.6e-1868116856
                            -HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
               Homeobox   8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                            + eq+++Le+ Fe  +++  e++ +LA+ lgL+ rqV +WFqNrRa++k
  Traes_4AS_F04DD4409.1  68 NVEQVRTLEKNFEVANKLEPERKMQLARALGLQPRQVAIWFQNRRARWK 116
                            579*********************************************9 PP
2HD-ZIP_I/II122.91.6e-3969152891
            HD-ZIP_I/II   8 keqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                             eqv++LE++Fe  +kLeperK++lar+Lglqprqva+WFqnrRAR+ktkqlEkdy++Lkr++da+k+en++L +++++L++e+
  Traes_4AS_F04DD4409.1  69 VEQVRTLEKNFEVANKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDVLKRQFDAVKAENDALLSHNKKLQSEI 152
                            79*******************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.81158118IPR001356Homeobox domain
SMARTSM003898.6E-1460122IPR001356Homeobox domain
SuperFamilySSF466893.64E-1866120IPR009057Homeodomain-like
PfamPF000461.7E-1568116IPR001356Homeobox domain
CDDcd000867.92E-1570119No hitNo description
Gene3DG3DSA:1.10.10.603.3E-1970125IPR009057Homeodomain-like
PRINTSPR000318.5E-68998IPR000047Helix-turn-helix motif
PROSITE patternPS00027093116IPR017970Homeobox, conserved site
PRINTSPR000318.5E-698114IPR000047Helix-turn-helix motif
PfamPF021831.0E-15118157IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MPCQLIRHPR TDRARSLSPM LGKRPAMYGG GGDGGCGGDE VTGGGGGGGA XXXXXXXXXX  60
XXXXXXXNVE QVRTLEKNFE VANKLEPERK MQLARALGLQ PRQVAIWFQN RRARWKTKQL  120
EKDYDVLKRQ FDAVKAENDA LLSHNKKLQS EILGLKGCRE AASELINLNK ETEASCSNRS  180
ENSSEINLDI SRTPPSDGPM DAPPSHQQGG GSGGGMIPFY PSVARPSAGV DIDHLLHASV  240
PKMEHHHGGP DTASFGNLLC GVDEPPPFWP WADHQQFN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110118RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3590410.0AK359041.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1087P18.
GenBankAK3597470.0AK359747.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1102E15.
GenBankAK3662450.0AK366245.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2041G22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020188842.11e-150homeobox-leucine zipper protein HOX21-like isoform X2
SwissprotQ8S7W91e-114HOX21_ORYSJ; Homeobox-leucine zipper protein HOX21
TrEMBLA0A446SE151e-165A0A446SE15_TRITD; Uncharacterized protein
STRINGTraes_4AS_F04DD4409.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22893894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.13e-70HD-ZIP family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]