PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4AS_E4935832A.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | bHLH | ||||||||
Protein Properties | Length: 350aa MW: 38345.9 Da PI: 6.2444 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 24.7 | 4.2e-08 | 142 | 220 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC.............................TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkas..........................kapskKlsKaeiLekAveYIksLq 55 + h ++Er+RR+++ + f L +++P + ++ +K++ L +++Y+k+L+ Traes_4AS_E4935832A.2 142 QEHVIAERKRREKLQQQFVSLATIVPGLRkvrdketwlhsrghhtncprraplvtLRHCFQTDKISLLGSTIDYVKQLE 220 5799***********************777************************8778888****************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.93E-11 | 133 | 171 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.89 | 139 | 219 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.2E-12 | 142 | 223 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.5E-6 | 142 | 220 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.51E-5 | 144 | 224 | No hit | No description |
SMART | SM00353 | 4.9E-8 | 145 | 225 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.93E-11 | 201 | 231 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS51671 | 9.476 | 281 | 350 | IPR002912 | ACT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0016597 | Molecular Function | amino acid binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence Send to blast |
MEQPNQWLTQ TEQEELAYMY QQEGVPVPGM EQQFAEPPLP GHQEQYYTPP MATPSFHPSR 60 SSDFPSFGGS SSLPNLPFGS TTVKNELGQP SPPPPSSNFL SFGAGQAGTL NFSGGAWQHD 120 GVEGTMQLQA PERRSRAPAN AQEHVIAERK RREKLQQQFV SLATIVPGLR KVRDKETWLH 180 SRGHHTNCPR RAPLVTLRHC FQTDKISLLG STIDYVKQLE DKVRALEEQG SRRSSESTTV 240 FESKCRISAA DNDAAGPSGS GDAAEDSSPA VEASIRGHTA LLKICCKERR GVLVMVLSEL 300 ENQGLSIINT NVVPFTDSCL NITITVQIEE GFSSAAELVR NLTVALRSFS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 147 | 152 | ERKRRE |
2 | 148 | 153 | RKRREK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020156973.1 | 0.0 | transcription factor bHLH19-like | ||||
TrEMBL | A0A446QP75 | 0.0 | A0A446QP75_TRITD; Uncharacterized protein | ||||
STRING | Traes_4AS_E4935832A.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6401 | 31 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22760.1 | 6e-27 | bHLH family protein |
Publications ? help Back to Top | |||
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