PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AS_E4935832A.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 350aa    MW: 38345.9 Da    PI: 6.2444
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AS_E4935832A.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.74.2e-08142220355
                            HHHHHHHHHHHHHHHHHHHHHHCTSCCC.............................TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   3 rahnerErrRRdriNsafeeLrellPkas..........................kapskKlsKaeiLekAveYIksLq 55 
                            + h ++Er+RR+++ + f  L +++P +                             ++   +K++ L  +++Y+k+L+
  Traes_4AS_E4935832A.2 142 QEHVIAERKRREKLQQQFVSLATIVPGLRkvrdketwlhsrghhtncprraplvtLRHCFQTDKISLLGSTIDYVKQLE 220
                            5799***********************777************************8778888****************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.93E-11133171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.89139219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.2E-12142223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.5E-6142220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.51E-5144224No hitNo description
SMARTSM003534.9E-8145225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-11201231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516719.476281350IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MEQPNQWLTQ TEQEELAYMY QQEGVPVPGM EQQFAEPPLP GHQEQYYTPP MATPSFHPSR  60
SSDFPSFGGS SSLPNLPFGS TTVKNELGQP SPPPPSSNFL SFGAGQAGTL NFSGGAWQHD  120
GVEGTMQLQA PERRSRAPAN AQEHVIAERK RREKLQQQFV SLATIVPGLR KVRDKETWLH  180
SRGHHTNCPR RAPLVTLRHC FQTDKISLLG STIDYVKQLE DKVRALEEQG SRRSSESTTV  240
FESKCRISAA DNDAAGPSGS GDAAEDSSPA VEASIRGHTA LLKICCKERR GVLVMVLSEL  300
ENQGLSIINT NVVPFTDSCL NITITVQIEE GFSSAAELVR NLTVALRSFS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147152ERKRRE
2148153RKRREK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020156973.10.0transcription factor bHLH19-like
TrEMBLA0A446QP750.0A0A446QP75_TRITD; Uncharacterized protein
STRINGTraes_4AS_E4935832A.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64013149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.16e-27bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]