PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AS_DD5072A70.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 311aa    MW: 33759.7 Da    PI: 5.8325
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AS_DD5072A70.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.54.3e-12135183355
                            HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             +h+ +Er RR++iN+++  L++l+P +    +k   Ka++L + ++Y++sLq
  Traes_4AS_DD5072A70.1 135 NNHSLAERFRREKINERMKHLQDLVPGC----NKITGKAMMLDEIINYVQSLQ 183
                            58**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.82E-12130187No hitNo description
SuperFamilySSF474594.84E-18130199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.847132182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-18132199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-9135183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-10138188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MYSPPCSAAG SNGERSFAAG ANPLALLDHA MDFDEHVLFP MHNAGMQDGV QFYNPTAGGS  60
GTELSRNMSM EKGLKGGKRK GSGEGSSTMH SQQEETGGMS QREVSMEGAG EKEGDAASNR  120
EDYVHIRAKR GQATNNHSLA ERFRREKINE RMKHLQDLVP GCNKITGKAM MLDEIINYVQ  180
SLQRQVEFLS MKLSAVSPEL NCDLDLQDIL CPQDARSAFP GYGQRLGSVH PNSNMYRASQ  240
PGLSRPELYG NGIIIPNPAN VHMARAAQQL SAFPQRSIVW DEELGNVGPA AFPSDVVGAS  300
SLENSESMKV E
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020159228.10.0transcription factor bHLH137-like isoform X1
RefseqXP_020159236.10.0transcription factor bHLH76-like isoform X3
RefseqXP_020159242.10.0transcription factor bHLH76-like isoform X3
TrEMBLA0A3B6HSY70.0A0A3B6HSY7_WHEAT; Uncharacterized protein
STRINGTraes_4AS_DD5072A70.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45362933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.11e-44bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]