PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AS_D95D10893.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 597aa    MW: 65550 Da    PI: 7.0342
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AS_D95D10893.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.77.7e-12443489455
                            HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                            +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ +I +Lq
  Traes_4AS_D95D10893.1 443 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITHITDLQ 489
                            799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.6E-5054243IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.101439488IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.67E-14442493No hitNo description
PfamPF000102.1E-9443489IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-17443501IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.68E-18443505IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-16445494IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 597 aa     Download sequence    Send to blast
MKTEIEEEGT RGSWTEEDKS LCASVLGLDA FTYLTKGGGA ISENLVAASA LVGLQNKLQD  60
LVEADGKSLR WNYAIFWQLS HTKSGELVLG WGDGSCREPH DNEMNSTTRG DIHDASSLSQ  120
QRMRKRVLER LHTAFAGADE EDDALRIDQV TDTELFFLAS MYFAFPCHVG GPGQVFATGA  180
PLWIPNNPHK VSPSNYCYRG FLASAAGFRT IVLLPFEAGV LELGSMQNVL ESAEALETIR  240
SVFLGASSKK AASEKHDENS SAQISPGLAK IFGKDLNLSR PLVNTGAVPL KMNERSWDMQ  300
KNCGGESLLL PNVRKGLQNF TWSQARGLNS HHQKFGNGIL VVKNETSQRS NGAAHSPGLS  360
PFQLQNSQQI LTQPPPQSQT PRHIDFSVGS SSKSGVLTSQ AALLGGENGS VDGLCKEQVA  420
PAMEGQPRKR GRKPANGRVE ALNHVEAERQ RREKLNQRFY ALRAVVPNIS KMDKASLLGD  480
AITHITDLQK KLKEMESERD MFLESGMVDR RVQTPRPEVD IQVVQDEVLV RVMSPMDNYP  540
INNVFQAFEE AEVKVGESKI TSNNGKVMHS FVIKSPGSEQ QTREKLIAAM SRAMNSM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-25437499264Transcription factor MYC2
5gnj_B3e-25437499264Transcription factor MYC2
5gnj_E3e-25437499264Transcription factor MYC2
5gnj_F3e-25437499264Transcription factor MYC2
5gnj_G3e-25437499264Transcription factor MYC2
5gnj_I3e-25437499264Transcription factor MYC2
5gnj_M3e-25437499264Transcription factor MYC2
5gnj_N3e-25437499264Transcription factor MYC2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2522400.0AK252240.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf144n21, mRNA sequence.
GenBankAK3543650.0AK354365.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1006N15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020150590.10.0transcription factor bHLH13-like
TrEMBLA0A3B6HQY20.0A0A3B6HQY2_WHEAT; Uncharacterized protein
TrEMBLA0A446QM340.0A0A446QM34_TRITD; Uncharacterized protein
STRINGTraes_4AS_D95D10893.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51743860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.31e-130bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]