PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4AS_D4763E468.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C2H2 | ||||||||
Protein Properties | Length: 182aa MW: 19205.8 Da PI: 8.686 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11 | 0.0013 | 52 | 74 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+++F++ L H +H Traes_4AS_D4763E468.1 52 FECKTCSRRFPSFQALGGHRASH 74 89**********99999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.09E-5 | 48 | 78 | No hit | No description |
Pfam | PF13912 | 4.0E-13 | 51 | 76 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.27 | 52 | 74 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.785 | 52 | 79 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 54 | 74 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.57E-5 | 90 | 116 | No hit | No description |
Pfam | PF13912 | 3.9E-9 | 92 | 117 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 2.5 | 93 | 115 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 95 | 115 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MAHGKRSRQQ AESTSVSLLD LDSGDMARIL LLFSGHHQHH AHYGPSSPER VFECKTCSRR 60 FPSFQALGGH RASHKKPRLA DGAGAEPPKP KVHGCSICGL EFAVGQALGG HMRRHRAVAA 120 AGPGVGLGLS LGLGPNEDGN KKAAAAAELA LDLNEPALEE EPADRAMLGL AVGFPVVVDF 180 RR |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ244879 | 0.0 | DQ244879.1 Zea mays clone 11295 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010228788.1 | 5e-82 | zinc finger protein ZAT11 | ||||
TrEMBL | A0A3B6HTK7 | 1e-127 | A0A3B6HTK7_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446QSI7 | 1e-127 | A0A446QSI7_TRITD; Uncharacterized protein | ||||
STRING | Traes_4AS_D4763E468.1 | 1e-128 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP501 | 37 | 157 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28710.1 | 3e-27 | C2H2 family protein |
Publications ? help Back to Top | |||
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