PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AS_C30034054.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 489aa    MW: 54016.5 Da    PI: 5.9495
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AS_C30034054.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS359.26e-1101654881325
                   GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 
                            l++++++c +av++++ +  + l+++l++++s +g+p+qRl ay++e+L ar +++++ lyk+l+++e ++ + se +++++l+++++
  Traes_4AS_C30034054.1 165 LKQVIVACGKAVDENNCH-EDLLISELQKMVSVSGEPIQRLGAYMLEGLVARRYSTGHALYKSLKCKEPQP-TNSELMSYMHLLYDIC 250
                            578999******996655.58899********************************************986.567888999******* PP

                   GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgv 174
                            P+++f+++ aN aI eav+ge+ +HiiDf+i qG QW++++qaLa+R +gpp lRiTg+++++s   +   l  +g+rL ++A+++ +
  Traes_4AS_C30034054.1 251 PFFRFGYMSANGAIAEAVKGENFIHIIDFQIAQGSQWVTMIQALAARVSGPPYLRITGIDDSDSAyaRGGGLDIVGRRLCNIAQSCCL 338
                            *************************************************************988899999****************** PP

                   GRAS 175 pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262
                            pfefn+ v  + ++++le+L++++gEa+aVn+++qlh+++desv++e++rd++L++vkslsP+vv++veqea++n+++F+ r +e+l+
  Traes_4AS_C30034054.1 339 PFEFNA-VNAASHEVTLEHLDIRKGEAIAVNFAYQLHHTPDESVCIENHRDRILRMVKSLSPRVVTLVEQEANTNTAPFFSRYMETLD 425
                            ******.79999**************************************************************************** PP

                   GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFk 325
                            yy+a+f+++++  pr+++ r++ E+++++r+ivn++acegaer+erhe ++kWr+r+ +aGF+
  Traes_4AS_C30034054.1 426 YYTAMFEAIDVACPRDDKVRMSTEQHCVARDIVNLIACEGAERVERHEPFGKWRSRFAMAGFR 488
                            **************************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.141139489IPR005202Transcription factor GRAS
PfamPF035142.1E-107165488IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MSAKASNMSY RYPDNSQIPY YSSSMHVGGN GTCYVQQNHE DHHYVSSDGG SQNSDSKSQV  60
IHPQYSTLES SSANCVYAAN SSTSPQCISG SHISLHDSHS DHTYDSPASG ITEVPGLGFT  120
TLQELADALF GSDSDAVSSD RSLVIGAAMH QSNWRELLGI SSGDLKQVIV ACGKAVDENN  180
CHEDLLISEL QKMVSVSGEP IQRLGAYMLE GLVARRYSTG HALYKSLKCK EPQPTNSELM  240
SYMHLLYDIC PFFRFGYMSA NGAIAEAVKG ENFIHIIDFQ IAQGSQWVTM IQALAARVSG  300
PPYLRITGID DSDSAYARGG GLDIVGRRLC NIAQSCCLPF EFNAVNAASH EVTLEHLDIR  360
KGEAIAVNFA YQLHHTPDES VCIENHRDRI LRMVKSLSPR VVTLVEQEAN TNTAPFFSRY  420
METLDYYTAM FEAIDVACPR DDKVRMSTEQ HCVARDIVNL IACEGAERVE RHEPFGKWRS  480
RFAMAGFRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-4717248826330Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2517040.0AK251704.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf124m13, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020156010.10.0scarecrow-like protein 21
SwissprotQ8GVE11e-179CIGR2_ORYSJ; Chitin-inducible gibberellin-responsive protein 2
TrEMBLA0A3B6HS680.0A0A3B6HS68_WHEAT; Uncharacterized protein
STRINGTraes_4AS_C30034054.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151337117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-161GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]
  3. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  4. Tanabe S, et al.
    The elicitor-responsive gene for a GRAS family protein, CIGR2, suppresses cell death in rice inoculated with rice blast fungus via activation of a heat shock transcription factor, OsHsf23.
    Biosci. Biotechnol. Biochem., 2016. 80(1): p. 145-51
    [PMID:26287768]