PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AS_B523232F0.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 124aa    MW: 14058 Da    PI: 9.6129
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AS_B523232F0.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.44e-16251101094
                            HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..E CS
                     B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelv 93 
                            v +++ l +p +f ++hg+ ++++++l++   +g+sW v+l++   ++++ r  l+ GW +F+ +ngL +gD++ F+  g+ s +e +
  Traes_4AS_B523232F0.1  25 VRQKQYLNVPVEFQNAHGYAERSKVELRM---RGKSWFVNLKHsprERGRPRASLRYGWHQFCVDNGLGVGDTCFFRALGEgSAGEVH 109
                            66778899**********99888766664...67*******997655555559************************88888999665 PP

                            E CS
                     B3  94 v 94 
                            v
  Traes_4AS_B523232F0.1 110 V 110
                            5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-2411119IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-1612103IPR015300DNA-binding pseudobarrel domain
CDDcd100171.68E-1212112No hitNo description
SMARTSM010191.1E-613119IPR003340B3 DNA binding domain
PROSITE profilePS5086311.88516114IPR003340B3 DNA binding domain
PfamPF023625.3E-1325110IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MAVMGVDDGP ASLFTVMLRE CNLGVRQKQY LNVPVEFQNA HGYAERSKVE LRMRGKSWFV  60
NLKHSPRERG RPRASLRYGW HQFCVDNGLG VGDTCFFRAL GEGSAGEVHV LKVEVRRRDG  120
SYVD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3769981e-136AK376998.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3145A16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020148430.15e-83B3 domain-containing protein Os03g0212300-like
SwissprotQ10Q262e-44Y3123_ORYSJ; B3 domain-containing protein Os03g0212300
TrEMBLA0A3B6HP262e-85A0A3B6HP26_WHEAT; Uncharacterized protein
TrEMBLA0A446QN342e-85A0A446QN34_TRITD; Uncharacterized protein
STRINGTraes_4AS_B523232F0.18e-88(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47483264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.15e-07B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]