PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4AS_AA492B6A9.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | FAR1 | ||||||||
Protein Properties | Length: 44aa MW: 5387.12 Da PI: 9.4842 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 37.8 | 6.4e-12 | 2 | 43 | 1 | 42 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkre 42 +fYn+YA e GFsvrks+ + n+ i+ r+ vCs++g+re Traes_4AS_AA492B6A9.1 2 EFYNKYALEKGFSVRKSYVEWDGSNKYIILRKIVCSRQGFRE 43 6***************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.2E-9 | 2 | 43 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 44 aa Download sequence Send to blast |
YEFYNKYALE KGFSVRKSYV EWDGSNKYII LRKIVCSRQG FRED |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 4e-65 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020188780.1 | 1e-22 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A446RF00 | 2e-21 | A0A446RF00_TRITD; Uncharacterized protein | ||||
TrEMBL | A0A452XQP3 | 1e-20 | A0A452XQP3_AEGTS; Uncharacterized protein | ||||
TrEMBL | A0A453B6N6 | 1e-20 | A0A453B6N6_AEGTS; Uncharacterized protein | ||||
TrEMBL | A0A453GGC5 | 1e-20 | A0A453GGC5_AEGTS; Uncharacterized protein | ||||
TrEMBL | A0A453JUJ9 | 1e-20 | A0A453JUJ9_AEGTS; Uncharacterized protein | ||||
STRING | Traes_1BL_9BF41B805.1 | 2e-24 | (Triticum aestivum) | ||||
STRING | Traes_4BL_0437CF0AD.1 | 2e-24 | (Triticum aestivum) | ||||
STRING | Traes_4BL_0437CF0AD1.1 | 2e-24 | (Triticum aestivum) | ||||
STRING | Traes_6AL_B082ABBFC.1 | 2e-24 | (Triticum aestivum) | ||||
STRING | Traes_7AL_5585F9BD1.1 | 1e-24 | (Triticum aestivum) | ||||
STRING | Traes_7AS_0437CF0AD.1 | 2e-24 | (Triticum aestivum) |
Publications ? help Back to Top | |||
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